transposable elements

A Chromosome-Scale Genome Assembly for the Fusarium oxysporum Strain Fo5176 To Establish a Model Arabidopsis-Fungal Pathosystem
Like Fokkens, Li Guo, Susanne Dora, Bo Wang, Kai Ye, Clara Sánchez-Rodríguez, Daniel Croll

G3: Genes, Genomes, Genetics October 2020 10: 3549-3555; https://doi.org/10.1534/g3.120.401375
Improved Reference Genome for Cyclotella cryptica CCMP332, a Model for Cell Wall Morphogenesis, Salinity Adaptation, and Lipid Production in Diatoms (Bacillariophyta)
Wade R. Roberts, Kala M. Downey, Elizabeth C. Ruck, Jesse C. Traller, Andrew J. Alverson

G3: Genes, Genomes, Genetics September 2020 10: 2965-2974; https://doi.org/10.1534/g3.120.401408
Independent Whole-Genome Duplications Define the Architecture of the Genomes of the Devastating West African Cacao Black Pod Pathogen Phytophthora megakarya and Its Close Relative Phytophthora palmivora
Abraham Morales-Cruz, Shahin S. Ali, Andrea Minio, Rosa Figueroa-Balderas, Jadran F. García, Takao Kasuga, Alina S. Puig, Jean-Philippe Marelli, Bryan A. Bailey, Dario Cantu

G3: Genes, Genomes, Genetics July 2020 10: 2241-2255; https://doi.org/10.1534/g3.120.401014
Dynamic Patterns of Transcript Abundance of Transposable Element Families in Maize
Sarah N. Anderson, Michelle C. Stitzer, Peng Zhou, Jeffrey Ross-Ibarra, Cory D. Hirsch, Nathan M. Springer

G3: Genes, Genomes, Genetics November 2019 9: 3673-3682; https://doi.org/10.1534/g3.119.400431
Population Genome Sequencing of the Scab Fungal Species Venturia inaequalis, Venturia pirina, Venturia aucupariae and Venturia asperata
Bruno Le Cam, Dan Sargent, Jérôme Gouzy, Joëlle Amselem, Marie-Noëlle Bellanger, Olivier Bouchez, Spencer Brown, Valérie Caffier, Marie De Gracia, Robert Debuchy, Ludovic Duvaux, Thibaut Payen, Mélanie Sannier, Jason Shiller, Jérôme Collemare, Christophe Lemaire

G3: Genes, Genomes, Genetics August 2019 9: 2405-2414; https://doi.org/10.1534/g3.119.400047
Draft Genome Assembly and Population Genetics of an Agricultural Pollinator, the Solitary Alkali Bee (Halictidae: Nomia melanderi)
Karen M. Kapheim, Hailin Pan, Cai Li, Charles Blatti, Brock A. Harpur, Panagiotis Ioannidis, Beryl M. Jones, Clement F. Kent, Livio Ruzzante, Laura Sloofman, Eckart Stolle, Robert M. Waterhouse, Amro Zayed, Guojie Zhang, William T. Wcislo

G3: Genes, Genomes, Genetics March 2019 9: 625-634; https://doi.org/10.1534/g3.118.200865
Subtle Perturbations of the Maize Methylome Reveal Genes and Transposons Silenced by Chromomethylase or RNA-Directed DNA Methylation Pathways
Sarah N. Anderson, Gregory J. Zynda, Jawon Song, Zhaoxue Han, Matthew W. Vaughn, Qing Li, Nathan M. Springer

G3: Genes, Genomes, Genetics June 2018 8: 1921-1932; https://doi.org/10.1534/g3.118.200284
McClintock: An Integrated Pipeline for Detecting Transposable Element Insertions in Whole-Genome Shotgun Sequencing Data
Michael G. Nelson, Raquel S. Linheiro, Casey M. Bergman

G3: Genes, Genomes, Genetics August 2017 7: 2763-2778; https://doi.org/10.1534/g3.117.043893
Long Terminal Repeat Retrotransposon Content in Eight Diploid Sunflower Species Inferred from Next-Generation Sequence Data
Hannah M. Tetreault, Mark C. Ungerer

G3: Genes, Genomes, Genetics August 2016 6: 2299-2308; https://doi.org/10.1534/g3.116.029082
Formation of Extrachromosomal Circular DNA from Long Terminal Repeats of Retrotransposons in Saccharomyces cerevisiae
Henrik D. Møller, Camilla E. Larsen, Lance Parsons, Anders Johannes Hansen, Birgitte Regenberg, Tobias Mourier

G3: Genes, Genomes, Genetics February 2016 6: 453-462; https://doi.org/10.1534/g3.115.025858

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