SNP

LinkImpute: Fast and Accurate Genotype Imputation for Nonmodel Organisms
Daniel Money, Kyle Gardner, Zoë Migicovsky, Heidi Schwaninger, Gan-Yuan Zhong, Sean Myles

G3: Genes, Genomes, Genetics November 2015 5: 2383-2390; https://doi.org/10.1534/g3.115.021667
SNP Assay Development for Linkage Map Construction, Anchoring Whole-Genome Sequence, and Other Genetic and Genomic Applications in Common Bean
Qijian Song, Gaofeng Jia, David L. Hyten, Jerry Jenkins, Eun-Young Hwang, Steven G. Schroeder, Juan M. Osorno, Jeremy Schmutz, Scott A. Jackson, Phillip E. McClean, Perry B. Cregan

G3: Genes, Genomes, Genetics November 2015 5: 2285-2290; https://doi.org/10.1534/g3.115.020594
Comparison of Genomic Selection Models to Predict Flowering Time and Spike Grain Number in Two Hexaploid Wheat Doubled Haploid Populations
Saravanan Thavamanikumar, Rudy Dolferus, Bala R. Thumma

G3: Genes, Genomes, Genetics October 2015 5: 1991-1998; https://doi.org/10.1534/g3.115.019745
SWEEP: A Tool for Filtering High-Quality SNPs in Polyploid Crops
Josh P. Clevenger, Peggy Ozias-Akins

G3: Genes, Genomes, Genetics September 2015 5: 1797-1803; https://doi.org/10.1534/g3.115.019703
Identification of Reproduction-Related Gene Polymorphisms Using Whole Transcriptome Sequencing in the Large White Pig Population
Daniel Fischer, Asta Laiho, Attila Gyenesei, Anu Sironen

G3: Genes, Genomes, Genetics July 2015 5: 1351-1360; https://doi.org/10.1534/g3.115.018382
Resequencing at ≥40-Fold Depth of the Parental Genomes of a Solanum lycopersicum × S. pimpinellifolium Recombinant Inbred Line Population and Characterization of Frame-Shift InDels That Are Highly Likely to Perturb Protein Function
Zoltan Kevei, Robert C. King, Fady Mohareb, Martin J. Sergeant, Sajjad Z. Awan, Andrew J. Thompson

G3: Genes, Genomes, Genetics May 2015 5: 971-981; https://doi.org/10.1534/g3.114.016121
A Multipurpose, High-Throughput Single-Nucleotide Polymorphism Chip for the Dengue and Yellow Fever Mosquito, Aedes aegypti
Benjamin R. Evans, Andrea Gloria-Soria, Lin Hou, Carolyn McBride, Mariangela Bonizzoni, Hongyu Zhao, Jeffrey R. Powell

G3: Genes, Genomes, Genetics May 2015 5: 711-718; https://doi.org/10.1534/g3.114.016196
Scanning the Effects of Ethyl Methanesulfonate on the Whole Genome of Lotus japonicus Using Second-Generation Sequencing Analysis
Nur Fatihah Mohd-Yusoff, Pradeep Ruperao, Nurain Emylia Tomoyoshi, David Edwards, Peter M. Gresshoff, Bandana Biswas, Jacqueline Batley

G3: Genes, Genomes, Genetics April 2015 5: 559-567; https://doi.org/10.1534/g3.114.014571
High-Resolution Linkage Map and Chromosome-Scale Genome Assembly for Cassava (Manihot esculenta Crantz) from 10 Populations
International Cassava Genetic Map Consortium (ICGMC)

G3: Genes, Genomes, Genetics January 2015 5: 133-144; https://doi.org/10.1534/g3.114.015008
Fast and Cost-Effective Genetic Mapping in Apple Using Next-Generation Sequencing
Kyle M. Gardner, Patrick Brown, Thomas F. Cooke, Scott Cann, Fabrizio Costa, Carlos Bustamante, Riccardo Velasco, Michela Troggio, Sean Myles

G3: Genes, Genomes, Genetics September 2014 4: 1681-1687; https://doi.org/10.1534/g3.114.011023

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