RNA sequencing

ARMOR: An Automated Reproducible MOdular Workflow for Preprocessing and Differential Analysis of RNA-seq Data
Stephany Orjuela, Ruizhu Huang, Katharina M. Hembach, Mark D. Robinson, Charlotte Soneson

G3: Genes, Genomes, Genetics July 2019 9: 2089-2096; https://doi.org/10.1534/g3.119.400185
Event Analysis: Using Transcript Events To Improve Estimates of Abundance in RNA-seq Data
Jeremy R. B. Newman, Patrick Concannon, Manuel Tardaguila, Ana Conesa, Lauren M. McIntyre

G3: Genes, Genomes, Genetics September 2018 8: 2923-2940; https://doi.org/10.1534/g3.118.200373
Transcriptome Analysis of Litsea cubeba Floral Buds Reveals the Role of Hormones and Transcription Factors in the Differentiation Process
Wenguang He, Yicun Chen, Ming Gao, Yunxiao Zhao, Zilong Xu, Pei Cao, Qiyan Zhang, Yulian Jiao, Hongsheng Li, Liwen Wu, Yangdong Wang

G3: Genes, Genomes, Genetics April 2018 8: 1103-1114; https://doi.org/10.1534/g3.117.300481
Comparative Transcriptomics of Malaria Mosquito Testes: Function, Evolution, and Linkage
Bryan J. Cassone, Raissa G. G. Kay, Matthew P. Daugherty, Bradley J. White

G3: Genes, Genomes, Genetics April 2017 7: 1127-1136; https://doi.org/10.1534/g3.117.040089
Genetic Regulation of Transcriptional Variation in Natural Arabidopsis thaliana Accessions
Yanjun Zan, Xia Shen, Simon K. G. Forsberg, Örjan Carlborg

G3: Genes, Genomes, Genetics August 2016 6: 2319-2328; https://doi.org/10.1534/g3.116.030874
Identification of a Novel Nematotoxic Protein by Challenging the Model Mushroom Coprinopsis cinerea with a Fungivorous Nematode
David Fernando Plaza, Stefanie Sofia Schmieder, Anna Lipzen, Erika Lindquist, Markus Künzler

G3: Genes, Genomes, Genetics January 2016 6: 87-98; https://doi.org/10.1534/g3.115.023069
Differentiation State-Specific Mitochondrial Dynamic Regulatory Networks Are Revealed by Global Transcriptional Analysis of the Developing Chicken Lens
Daniel Chauss, Subhasree Basu, Suren Rajakaruna, Zhiwei Ma, Victoria Gau, Sara Anastas, Lisa A. Brennan, J. Fielding Hejtmancik, A. Sue Menko, Marc Kantorow

G3: Genes, Genomes, Genetics August 2014 4: 1515-1527; https://doi.org/10.1534/g3.114.012120

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RNA sequencing