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Genome-Wide Association Study in Two Cohorts from a Multi-generational Mouse Advanced Intercross Line Highlights the Difficulty of Replication Due to Study-Specific Heterogeneity
Xinzhu Zhou, Celine L. St. Pierre, Natalia M. Gonzales, Jennifer Zou, Riyan Cheng, Apurva S. Chitre, Greta Sokoloff, Abraham A. Palmer

G3: Genes, Genomes, Genetics March 2020 10: 951-965; https://doi.org/10.1534/g3.119.400763
Testing Pleiotropy vs. Separate QTL in Multiparental Populations
Frederick J. Boehm, Elissa J. Chesler, Brian S. Yandell, Karl W. Broman

G3: Genes, Genomes, Genetics July 2019 9: 2317-2324; https://doi.org/10.1534/g3.119.400098
Whole Genome Sequencing and Progress Toward Full Inbreeding of the Mouse Collaborative Cross Population

John R. Shorter, Maya L. Najarian, Timothy A. Bell, Matthew Blanchard, Martin T. Ferris, Pablo Hock, Anwica Kashfeen, Kathryn E. Kirchoff, Colton L. Linnertz, J. Sebastian Sigmon, Darla R. Miller, Leonard McMillan, Fernando Pardo-Manuel de Villena

G3: Genes, Genomes, Genetics May 2019 9: 1303-1311; https://doi.org/10.1534/g3.119.400039
Cleaning Genotype Data from Diversity Outbred Mice
Karl W. Broman, Daniel M. Gatti, Karen L. Svenson, Śaunak Sen, Gary A. Churchill

G3: Genes, Genomes, Genetics May 2019 9: 1571-1579; https://doi.org/10.1534/g3.119.400165
A Diallel of the Mouse Collaborative Cross Founders Reveals Strong Strain-Specific Maternal Effects on Litter Size
John R. Shorter, Paul L. Maurizio, Timothy A. Bell, Ginger D. Shaw, Darla R. Miller, Terry J. Gooch, Jason S. Spence, Leonard McMillan, William Valdar, Fernando Pardo-Manuel de Villena

G3: Genes, Genomes, Genetics May 2019 9: 1613-1622; https://doi.org/10.1534/g3.118.200847
Determinants of QTL Mapping Power in the Realized Collaborative Cross
Gregory R. Keele, Wesley L. Crouse, Samir N. P. Kelada, William Valdar

G3: Genes, Genomes, Genetics May 2019 9: 1707-1727; https://doi.org/10.1534/g3.119.400194
Genetic Dissection of Resistance to the Three Fungal Plant Pathogens Blumeria graminis, Zymoseptoria tritici, and Pyrenophora tritici-repentis Using a Multiparental Winter Wheat Population
Melanie Stadlmeier, Lise Nistrup Jørgensen, Beatrice Corsi, James Cockram, Lorenz Hartl, Volker Mohler

G3: Genes, Genomes, Genetics May 2019 9: 1745-1757; https://doi.org/10.1534/g3.119.400068
Discovery of QTL Alleles for Grain Shape in the Japan-MAGIC Rice Population Using Haplotype Information
Daisuke Ogawa, Yasunori Nonoue, Hiroshi Tsunematsu, Noriko Kanno, Toshio Yamamoto, Jun-ichi Yonemaru

G3: Genes, Genomes, Genetics November 2018 8: 3559-3565; https://doi.org/10.1534/g3.118.200558
Empirical Comparisons of Different Statistical Models To Identify and Validate Kernel Row Number-Associated Variants from Structured Multi-parent Mapping Populations of Maize
Jinliang Yang, Cheng-Ting “Eddy” Yeh, Raghuprakash Kastoori Ramamurthy, Xinshuai Qi, Rohan L. Fernando, Jack C. M. Dekkers, Dorian J. Garrick, Dan Nettleton, Patrick S. Schnable

G3: Genes, Genomes, Genetics November 2018 8: 3567-3575; https://doi.org/10.1534/g3.118.200636
Recursive Algorithms for Modeling Genomic Ancestral Origins in a Fixed Pedigree
Chaozhi Zheng, Martin P. Boer, Fred A. van Eeuwijk

G3: Genes, Genomes, Genetics October 2018 8: 3231-3245; https://doi.org/10.1534/g3.118.200340

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