Institution: Massachusetts Inst of Technol MIT Libs

genomic selection

Assessing by Modeling the Consequences of Increased Recombination in Recurrent Selection of Oryza sativa and Brassica rapa
Elise Tourrette, Rex Bernardo, Matthieu Falque, Olivier C. Martin

G3: Genes, Genomes, Genetics October 2019 g3.400545.2019; https://doi.org/10.1534/g3.119.400545
A Bayesian Genomic Multi-output Regressor Stacking Model for Predicting Multi-trait Multi-environment Plant Breeding Data
Osval A. Montesinos-López, Abelardo Montesinos-López, José Crossa, Jaime Cuevas, José C. Montesinos-López, Zitlalli Salas Gutiérrez, Morten Lillemo, Juliana Philomin, Ravi Singh

G3: Genes, Genomes, Genetics October 2019 9: 3381-3393; https://doi.org/10.1534/g3.119.400336
Benchmarking Parametric and Machine Learning Models for Genomic Prediction of Complex Traits
Christina B. Azodi, Emily Bolger, Andrew McCarren, Mark Roantree, Gustavo de los Campos, Shin-Han Shiu

G3: Genes, Genomes, Genetics September 2019 g3.400498.2019; https://doi.org/10.1534/g3.119.400498
Genome-Wide Association Study of Yield Component Traits in Intermediate Wheatgrass and Implications in Genomic Selection and Breeding
Prabin Bajgain, Xiaofei Zhang, James A. Anderson

G3: Genes, Genomes, Genetics August 2019 9: 2429-2439; https://doi.org/10.1534/g3.119.400073
Genomic Selection for Yield and Seed Composition Traits Within an Applied Soybean Breeding Program
Benjamin B. Stewart-Brown, Qijian Song, Justin N. Vaughn, Zenglu Li

G3: Genes, Genomes, Genetics July 2019 9: 2253-2265; https://doi.org/10.1534/g3.118.200917
New Deep Learning Genomic-Based Prediction Model for Multiple Traits with Binary, Ordinal, and Continuous Phenotypes
Osval A. Montesinos-López, Javier Martín-Vallejo, José Crossa, Daniel Gianola, Carlos M. Hernández-Suárez, Abelardo Montesinos-López, Philomin Juliana, Ravi Singh

G3: Genes, Genomes, Genetics May 2019 9: 1545-1556; https://doi.org/10.1534/g3.119.300585
Lost in Translation: On the Problem of Data Coding in Penalized Whole Genome Regression with Interactions

Johannes W. R. Martini, Francisco Rosales, Ngoc-Thuy Ha, Johannes Heise, Valentin Wimmer, Thomas Kneib

G3: Genes, Genomes, Genetics April 2019 9: 1117-1129; https://doi.org/10.1534/g3.118.200961
Genomic Prediction of Autotetraploids; Influence of Relationship Matrices, Allele Dosage, and Continuous Genotyping Calls in Phenotype Prediction
Ivone de Bem Oliveira, Marcio F. R. Resende, Luis Felipe V. Ferrão, Rodrigo R. Amadeu, Jeffrey B. Endelman, Matias Kirst, Alexandre S. G. Coelho, Patricio R. Munoz

G3: Genes, Genomes, Genetics April 2019 9: 1189-1198; https://doi.org/10.1534/g3.119.400059
pSBVB: A Versatile Simulation Tool To Evaluate Genomic Selection in Polyploid Species
María L. Zingaretti, Amparo Monfort, Miguel Pérez-Enciso

G3: Genes, Genomes, Genetics February 2019 9: 327-334; https://doi.org/10.1534/g3.118.200942
A Benchmarking Between Deep Learning, Support Vector Machine and Bayesian Threshold Best Linear Unbiased Prediction for Predicting Ordinal Traits in Plant Breeding
Osval A. Montesinos-López, Javier Martín-Vallejo, José Crossa, Daniel Gianola, Carlos M. Hernández-Suárez, Abelardo Montesinos-López, Philomin Juliana, Ravi Singh

G3: Genes, Genomes, Genetics February 2019 9: 601-618; https://doi.org/10.1534/g3.118.200998

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