genomic selection

Genome-Wide Association Study of Yield Component Traits in Intermediate Wheatgrass and Implications in Genomic Selection and Breeding
Prabin Bajgain, Xiaofei Zhang, James A. Anderson

G3: Genes, Genomes, Genetics May 2019 g3.400073.2019; https://doi.org/10.1534/g3.119.400073
Optimizing Selection and Mating in Genomic Selection with a Look-Ahead Approach: An Operations Research Framework
Saba Moeinizade, Guiping Hu, Lizhi Wang, Patrick S. Schnable

G3: Genes, Genomes, Genetics May 2019 g3.200842.2018; https://doi.org/10.1534/g3.118.200842
Genomic Selection for Yield and Seed Composition Traits Within an Applied Soybean Breeding Program
Benjamin B. Stewart-Brown, Qijian Song, Justin N. Vaughn, Zenglu Li

G3: Genes, Genomes, Genetics May 2019 g3.200917.2018; https://doi.org/10.1534/g3.118.200917
New Deep Learning Genomic-Based Prediction Model for Multiple Traits with Binary, Ordinal, and Continuous Phenotypes
Osval A. Montesinos-López, Javier Martín-Vallejo, José Crossa, Daniel Gianola, Carlos M. Hernández-Suárez, Abelardo Montesinos-López, Philomin Juliana, Ravi Singh

G3: Genes, Genomes, Genetics May 2019 9: 1545-1556; https://doi.org/10.1534/g3.119.300585
Genomic Prediction of Autotetraploids; Influence of Relationship Matrices, Allele Dosage, and Continuous Genotyping Calls in Phenotype Prediction
Ivone de Bem Oliveira, Marcio F. R. Resende, Luis Felipe V. Ferrão, Rodrigo R. Amadeu, Jeffrey B. Endelman, Matias Kirst, Alexandre S. G. Coelho, Patricio R. Munoz

G3: Genes, Genomes, Genetics April 2019 9: 1189-1198; https://doi.org/10.1534/g3.119.400059
Lost in Translation: On the Problem of Data Coding in Penalized Whole Genome Regression with Interactions

Johannes W. R. Martini, Francisco Rosales, Ngoc-Thuy Ha, Johannes Heise, Valentin Wimmer, Thomas Kneib

G3: Genes, Genomes, Genetics April 2019 9: 1117-1129; https://doi.org/10.1534/g3.118.200961
A Benchmarking Between Deep Learning, Support Vector Machine and Bayesian Threshold Best Linear Unbiased Prediction for Predicting Ordinal Traits in Plant Breeding
Osval A. Montesinos-López, Javier Martín-Vallejo, José Crossa, Daniel Gianola, Carlos M. Hernández-Suárez, Abelardo Montesinos-López, Philomin Juliana, Ravi Singh

G3: Genes, Genomes, Genetics February 2019 9: 601-618; https://doi.org/10.1534/g3.118.200998
pSBVB: A Versatile Simulation Tool To Evaluate Genomic Selection in Polyploid Species
María L. Zingaretti, Amparo Monfort, Miguel Pérez-Enciso

G3: Genes, Genomes, Genetics February 2019 9: 327-334; https://doi.org/10.1534/g3.118.200942
OCMA: Fast, Memory-Efficient Factorization of Prohibitively Large Relationship Matrices
Zhi Xiong, Qingrun Zhang, Alexander Platt, Wenyuan Liao, Xinghua Shi, Gustavo de los Campos, Quan Long

G3: Genes, Genomes, Genetics January 2019 9: 13-19; https://doi.org/10.1534/g3.118.200908
Training Population Optimization for Prediction of Cassava Brown Streak Disease Resistance in West African Clones
Alfred Ozimati, Robert Kawuki, Williams Esuma, Ismail Siraj Kayondo, Marnin Wolfe, Roberto Lozano, Ismail Rabbi, Peter Kulakow, Jean-Luc Jannink

G3: Genes, Genomes, Genetics December 2018 8: 3903-3913; https://doi.org/10.1534/g3.118.200710

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