Institution: Massachusetts Inst of Technol MIT Libs

de novo assembly

A High-Quality Genome Assembly of the North American Song Sparrow, Melospiza melodia
Swarnali Louha, David A. Ray, Kevin Winker, Travis C. Glenn

G3: Genes, Genomes, Genetics April 2020 10: 1159-1166; https://doi.org/10.1534/g3.119.400929
De Novo Transcriptome Sequencing of Serangium japonicum (Coleoptera: Coccinellidae) and Application of Two Assembled Unigenes
Ya Hui Hu, Yong Liu, Lin Wei, Hao Tao Chen

G3: Genes, Genomes, Genetics January 2020 10: 247-254; https://doi.org/10.1534/g3.119.400785
Highly Continuous Genome Assembly of Eurasian Perch (Perca fluviatilis) Using Linked-Read Sequencing
Mikhail Yu. Ozerov, Freed Ahmad, Riho Gross, Lilian Pukk, Siim Kahar, Veljo Kisand, Anti Vasemägi

G3: Genes, Genomes, Genetics December 2018 8: 3737-3743; https://doi.org/10.1534/g3.118.200768
A High-Quality Reference Genome for the Invasive Mosquitofish Gambusia affinis Using a Chicago Library
Sandra L. Hoffberg, Nicholas J. Troendle, Travis C. Glenn, Ousman Mahmud, Swarnali Louha, Domitille Chalopin, Jeffrey L. Bennetzen, Rodney Mauricio

G3: Genes, Genomes, Genetics June 2018 8: 1855-1861; https://doi.org/10.1534/g3.118.200101
In Silico Whole Genome Sequencer and Analyzer (iWGS): a Computational Pipeline to Guide the Design and Analysis of de novo Genome Sequencing Studies
Xiaofan Zhou, David Peris, Jacek Kominek, Cletus P. Kurtzman, Chris Todd Hittinger, Antonis Rokas

G3: Genes, Genomes, Genetics November 2016 6: 3655-3662; https://doi.org/10.1534/g3.116.034249
Head Transcriptomes of Two Closely Related Species of Fruit Flies of the Anastrepha fraterculus Group Reveals Divergent Genes in Species with Extensive Gene Flow
Victor Borges Rezende, Carlos Congrains, André Luís A. Lima, Emeline Boni Campanini, Aline Minali Nakamura, Janaína Lima de Oliveira, Samira Chahad-Ehlers, Iderval Sobrinho Junior, Reinaldo Alves de Brito

G3: Genes, Genomes, Genetics October 2016 6: 3283-3295; https://doi.org/10.1534/g3.116.030486
The de novo Transcriptome and Its Analysis in the Worldwide Vegetable Pest, Delia antiqua (Diptera: Anthomyiidae)
Yu-Juan Zhang, Youjin Hao, Fengling Si, Shuang Ren, Ganyu Hu, Li Shen, Bin Chen

G3: Genes, Genomes, Genetics May 2014 4: 851-859; https://doi.org/10.1534/g3.113.009779

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de novo assembly