Institution: Massachusetts Inst of Technol MIT Libs

Collaborative Cross

gQTL: A Web Application for QTL Analysis Using the Collaborative Cross Mouse Genetic Reference Population
Kranti Konganti, Andre Ehrlich, Ivan Rusyn, David W. Threadgill

G3: Genes, Genomes, Genetics August 2018 8: 2559-2562; https://doi.org/10.1534/g3.118.200230
Inbred Strain Variant Database (ISVdb): A Repository for Probabilistically Informed Sequence Differences Among the Collaborative Cross Strains and Their Founders
Daniel Oreper, Yanwei Cai, Lisa M. Tarantino, Fernando Pardo-Manuel de Villena, William Valdar

G3: Genes, Genomes, Genetics June 2017 7: 1623-1630; https://doi.org/10.1534/g3.117.041491
Allelic Variation in the Toll-Like Receptor Adaptor Protein Ticam2 Contributes to SARS-Coronavirus Pathogenesis in Mice
Lisa E. Gralinski, Vineet D. Menachery, Andrew P. Morgan, Allison L. Totura, Anne Beall, Jacob Kocher, Jessica Plante, D. Corinne Harrison-Shostak, Alexandra Schäfer, Fernando Pardo-Manuel de Villena, Martin T. Ferris, Ralph S. Baric

G3: Genes, Genomes, Genetics June 2017 7: 1653-1663; https://doi.org/10.1534/g3.117.041434
The Founder Strains of the Collaborative Cross Express a Complex Combination of Advantageous and Deleterious Traits for Male Reproduction
Fanny Odet, Wenqi Pan, Timothy A. Bell, Summer G. Goodson, Alicia M. Stevans, Zianing Yun, David L. Aylor, Chia-Yu Kao, Leonard McMillan, Fernando Pardo-Manuel de Villena, Deborah A. O’Brien

G3: Genes, Genomes, Genetics December 2015 5: 2671-2683; https://doi.org/10.1534/g3.115.020172
Genomic Profiling of Collaborative Cross Founder Mice Infected with Respiratory Viruses Reveals Novel Transcripts and Infection-Related Strain-Specific Gene and Isoform Expression
Hao Xiong, Juliet Morrison, Martin T. Ferris, Lisa E. Gralinski, Alan C. Whitmore, Richard Green, Matthew J. Thomas, Jennifer Tisoncik-Go, Gary P. Schroth, Fernando Pardo-Manuel de Villena, Ralph S. Baric, Mark T. Heise, Xinxia Peng, Michael G. Katze

G3: Genes, Genomes, Genetics August 2014 4: 1429-1444; https://doi.org/10.1534/g3.114.011759
Haplotype Probabilities in Advanced Intercross Populations
Karl W. Broman

G3: Genes, Genomes, Genetics February 2012 2: 199-202; https://doi.org/10.1534/g3.111.001818
Expression Quantitative Trait Loci for Extreme Host Response to Influenza A in Pre-Collaborative Cross Mice
Daniel Bottomly, Martin T. Ferris, Lauri D. Aicher, Elizabeth Rosenzweig, Alan Whitmore, David L. Aylor, Bart L. Haagmans, Lisa E. Gralinski, Birgit G. Bradel-Tretheway, Janine T. Bryan, David W. Threadgill, Fernando Pardo-Manuel de Villena, Ralph S. Baric, Michael G. Katze, Mark Heise, Shannon K. McWeeney

G3: Genes, Genomes, Genetics February 2012 2: 213-221; https://doi.org/10.1534/g3.111.001800

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Collaborative Cross