Table 4 Root trait-associated markers identified in the CORE panel
TraitMarkerMrgaPos (cM)Sub. effectbP-valuecMAFLiteratured
RSA_5avgbs_29471.1.50944.7−7.03.40E-060.35
avgbs_cluster_34557.1.39944.7−6.51.19E-050.38
avgbs2_169620.1.39944.7−6.51.19E-050.38
avgbs_cluster_33692.1.63947.1−6.84.36E-060.39
RG_4GMI_ES01_c5178_479445.02.22.47E-050.20
avgbs_115262.1.425114.7−4.05.17E-08*0.06
avgbs2_46371.1.645131.66.32.12E-050.06
avgbs2_46371.1.85131.66.32.12E-050.06
avgbs_12458.1.21929.6−2.82.33E-060.31
avgbs_205346.1.411257.43.06.68E-08*0.361
avgbs_cluster_34786.1.141787.13.13.86E-08*0.19
avgbs_2188231810.9−1.61.50E-050.38
avgbs_cluster_38064.1.461812.8−2.42.98E-050.08
avgbs_cluster_37097.2.272322.3−2.14.49E-050.29
avgbs2_102913.1.472857.3−3.42.43E-050.093, 4
avgbs2_10058.2.59UKN4.92.51E-060.06
RG_5avgbs_cluster_26155.1.55272.72.62.40E-050.372
avgbs2_122749.1.55272.72.62.40E-050.372
avgbs_cluster_35609.1.46287.3−1.32.33E-060.4
avgbs_49723.1.148129.62.62.15E-06*0.296
avgbs_21913.1.621335.92.32.39E-060.35
avgbs_cluster_41284.1.501532.7−1.91.66E-050.42
avgbs_92060.1.201840.0−1.83.21E-050.312
avgbs_cluster_25488.1.1421146.0−3.12.42E-07*0.165
avgbs_120739.1.462441.8−2.87.76E-060.09
avgbs_2183242817.1−2.63.32E-050.073
RRGR_4GMI_DS_LB_83721359.6−0.0478.46E-07*0.27
avgbs_cluster_15604.1.251755.6−0.0552.38E-050.09
avgbs2_53658.1.101860.3−0.1041.26E-08*0.08
avgbs_56897.1.182836.8−0.0863.51E-050.18
avgbs_cluster_31411.1.542843.8−0.0885.36E-08*0.174
avgbs_cluster_29960.1.242843.80.0441.03E-050.154
GMI_GBS_137762843.8−0.0843.06E-050.194
GMI_GBS_965252843.8−0.0852.89E-050.194
RRGR_5avgbs_cluster_10425.1.7157.20.0196.77E-060.46
avgbs_200217450.30.0219.28E-07*0.34
avgbs_cluster_10309.1.10628.10.0213.43E-07*0.442
avgbs_cluster_10035.1.1113106.50.0201.84E-050.22
avgbs_207710UKN−0.0291.41E-06*0.1
AVRSAavgbs_29471.1.50944.7−2.13.00E-060.35
avgbs_cluster_33692.1.63947.1−1.91.17E-050.39
avgbs_cluster_28147.1.551784.31.99.04E-060.46
GMI_ES03_c19505_2231785.31.96.90E-060.49
  • a : “UKN” for unmapped SNPs. b: allelic substitution effect. c:* indicated markers having P-value below Bonferroni threshold. d: 1, (Holland et al. 1997); 2, (Huang et al. 2020); 3, (Siripoonwiwat et al. 1996); 4, (Sunstrum et al. 2019); 5, (Wooten et al. 2009); 6, (Tumino et al. 2017).