Table 1 Overlapping features between GWideCodeML and other bioinformatics tools. *1 Built-in models: site model (SM), branch model (BM), branch-site model (BSM). *2 PosiGene generates a new tree for each gene, where GWideCodeML prunes the provided species tree
FeatureLMAPPOTIONPosiGeneGWideCodeML
Built-in models *1SM, BM, BSMSMBSMSM, BM, BSM
Run costume modelsYesYes
Easy branch labelingYesYesYes
Automatic pruning *2YesYes
Filter out low quality orthologsYesYesYes
MultithreadingYesYesYesYes