Table 1 Summary of whole genome shotgun sequence data for Chelydra serpentina | Platform | Seq Center | Library Type | Nominal insert size | Lane or Cell | Raw Reads | Filtered Reads | Mean read length | Bases (Gb) |
|---|
| HiSeq 2000 | HCI | Paired-end | 200 bp | 7 | 157628596 | 148173891 | 124 | 18.37356248 |
| HiSeq 2000 | HCI | Mate-pair | 5.2 kb | 7 | 169828370 | 186726281 | 124 | 23.15405884 |
| HiSeq 2000 | HCI | Mate-pair | 10 kb | 7 | 217064820 | 238907655 | 124 | 29.62454922 |
| HiSeq 2000 | HCI | Paired-end | 200 bp | 1 | 513299776 | 488731386 | 124 | 60.60269186 |
| HiSeq 2000 | HCI | Paired-end | 200 bp | 8 | 522818714 | 480522479 | 124 | 59.5847874 |
| | | | total = | 1580640276 | | total = | 191.3396498 |
| PacBio Sequel | RTL | SMRT | 30 kb | 1 | 505167 | 504425 | | 4.62472795 |
| PacBio Sequel | RTL | SMRT | 30 kb | 2 | 728665 | 727435 | | 5.42416282 |
| PacBio Sequel | RTL | SMRT | 30 kb | 3 | 329474 | 329001 | | 2.226995261 |
| PacBio Sequel | RTL | SMRT | 30 kb | 4 | 493154 | 492682 | | 4.032488331 |
| PacBio Sequel | RTL | SMRT | 30 kb | 5 | 447251 | 446685 | | 3.649041827 |
| PacBio Sequel | RTL | SMRT | 30 kb | 6 | 687664 | 686769 | | 5.512641628 |
| | | | total = | 3191375 | | | 25.47005782 |
| HiSeq 2500 | BYU | Mate-pair | 3kb | 1 | 545122952 | 255825287 | 89 | 22.76845054 |
| HiSeq 2500 | BYU | Mate-pair | 3kb | 2 | 545477596 | 255974272 | 89 | 22.78171021 |
| HiSeq 2500 | BYU | Mate-pair | 20kb | 1 | 294039334 | 116881537 | 90 | 10.51933833 |
| | | | total = | 1384639882 | | total = | 45.55016075 |
| Oxford | UND | Nanopore | N/A | Maxwell | 560869 | N/A | N/A | 5.618462972 |
| Oxford | UND | Nanopore | N/A | PC | 391059 | N/A | N/A | 4.223690427 |
| Oxford | UND | Nanopore | N/A | PC-SRE1 | 594707 | N/A | N/A | 3.521567316 |
| Oxford | UND | Nanopore | N/A | PC-SRE2 | 644389 | N/A | N/A | 3.259168727 |
| Oxford | UND | Nanopore | N/A | PC-SRE3 | 522053 | N/A | N/A | 5.103403101 |
| | | | total = | 2713077 | | total = | 21.726292543 |