Table 6 Candidate genes for oat seed vigor-related traits
RiceBrachypodiumMaize
MarkeraTraitChr.E valueQuery recoveryGene modelChr.E valueQuery recoveryGene modelChr.E valueQuery recoveryGene model
avgbs_cluster_41284.1.50RG_519.00E-15100%Os01g0675500b26.00E-20100%Bradi2g46410b81.00E-1396%
33.00E-11100%Zm00001d043879b
avgbs_29471.1.50AVRSA123.00E-2296%33.00E-2296%
93.00E-2296%
23.00E-2096%
GMI_ES17_c1687_437SRGR_531.00E-36100%Os03g0191100c12.00E-31100%Bradi1g7180091.00E-17100%Zm00001d048218
12.00E-12100%Zm00001d028008
42.00E-12100%
avgbs2_183559.1.25SRGR_563.00E-21100%Os06g0146400d13.00E-1798%Bradi1g51010.1d62.00E-14100%Zm00001d036145
99.00E-1489%
  • a Context sequences used for BLAST were 64 bp long for avgbs- series of SNPs, and 122 bp for GMI_ES17_c1687_437. bsimilar to glucuronosyltransferase. c similar to mitochondrial carrier protein; d predicted to code for iron-sulfur cluster protein.