Table 2 Most significant marker-trait associations from genome-wide association scan of (n = 528)
TraitChrPosition (bp)PvalueaMAFbR2Effect (est)
L*1245885602.05−150.200.05−1.02
L*435801835.48−80.160.020.73
L*577002182.73−110.100.07−1.08
L*8284910122.49−110.070.04−1.28
L*9141106668.11−80.470.070.63
L*1218863255.18−60.140.050.66
L*1234060402.66−60.470.060.88
L*15152746989.08−100.090.021.05
a*1376707507.41−70.110.05−0.30
a*8247310995.22−80.090.07−0.81
a*8186436461.64−140.100.04−0.28
a*10349361567.66−90.450.04−0.25
a*11363866685.44−60.050.030.23
a*1430947775.70−70.280.04−0.26
a*15167299483.28−90.070.010.45
a*16266688262.39−50.090.040.26
b*1245885601.15−120.200.05−1.02
b*1354829031.83−70.410.040.46
b*750273457.56−60.060.05−0.24
b*7434988452.61−60.090.060.44
b*8246803765.88−60.300.060.31
b*9114563187.44−70.240.06−0.29
b*10122024421.03−80.430.040.38
b*1153826141.62−50.160.02−0.35
b*1234060406.27−80.470.060.88
b*13263115746.23−60.090.01−0.24
b*13345662102.73−70.060.050.63
b*1431263026.48−90.290.040.53
DFA6131378598.99−90.360.0060.26
DFA7510650744.70−110.140.08−0.13
DFA8285880064.25−60.070.020.17
DFA9147713771.62−60.430.030.05
DFA12259200274.26−70.490.05−0.07
DFA13382309821.11−90.490.010.07
DFA16264553533.47−70.140.040.09
  • a MAF minor allele frequency.

  • b R2 variance explained by significant SNP, P.value significance from Bonferroni taken from L* = model with 4 PCs, a* = model with 4 PCs, b* = model with 6 PCs, DFA = model from 5 PCs.