Table 2 Summary of the Cyclotella cryptica genome annotations
VERSION 1.0VERSION 2.0
TOTAL GENE MODELS21,12121,250
TOTAL GENE LENGTH, MB (%)31.07 (19.2%)44.35 (25.9%)
GENE DENSITY (GENES PER MB)131124
MEAN GENE SIZE, BP1,4712,087
TOTAL CODING LENGTH, MB (%)27.96 (17.3%)41.84 (24.3%)
EXONS PER GENE2.184.30
MEAN EXON LENGTH, BP608722
MEAN INTRON LENGTH, BP125152
TOTAL TRANSCRIPT ISOFORMS23,23531,409
AVERAGE TRANSCRIPT ISOFORMS PER GENE1.101.48
PROTEINS WITH PFAM DOMAIN (%)10,384 (44.7%)14,518 (46.2%)
PROTEINS WITH INTERPROSCAN HIT (%)14,565 (62.7%)19,690 (62.7%)
PROTEINS WITH SWISSPROT HIT (%)6,219 (26.8%)13,054 (41.6%)
PROTEINS WITH UNIPROT HIT (%)16,495 (71.0%)23,530 (74.9%)
GENE MODELS WITH AED < 0.5 (%)Not determined20,506 (96.5%)
COMPLETE EUKARYOTIC BUSCO COUNT (%)a184 (72.2%)192 (75.3%)
  • a Protein mode against the eukaryota_odb10 dataset.