Table 1 Mean and standard deviation of the allelic correlations between the imputed and true genotypes in the centromeric regions (± 1 Mb of the centromere) for the five B. bubalis submetacentric chromosomes, considering the UOA_WB_1 buffalo genome assembly, and the bovine genome assembly (UMD) a priori (Non Arranged) and a posteriori (Arranged) chromosome arrangement to the imputation in different marker scenarios
CHRAssemblySNP Set
10%15%20%25%30%
UOA_WB_10.949a ± 0.110.947a ± 0.080.894 ± 0.200.870 ± 0.160.844a ± 0.21
BBU1Arranged0.946a ± 0.110.961a ± 0.080.959 ± 0.090.962 ± 0.090.945b ± 0.12
Non Arranged0.849b ± 0.200.846b ± 0.230.862 ± 0.210.886 ± 0.220.894b ± 0.15
UOA_WB_10.975 ± 0.020.931a ± 0.020.922a ± 0.130.922 ± 0.130.902a ± 0.04
BBU2Arranged0.975 ± 0.020.979b ± 0.020.982b ± 0.010.982 ± 0.010.978b ± 0.02
Non Arranged0.965 ± 0.030.976b ± 0.020.982b ± 0.010.982 ± 0.010.971b ± 0.02
UOA_WB_10.985a ±0.010.960 ± 0.030.861a ± 0.180.854 ± 0.230.927a ± 0.02
BBU3Arranged0.986a ±0.010.957 ± 0.110.985b ± 0.010.952 ± 0.130.984b ± 0.01
Non Arranged0.971b ±0.020.978 ± 0.020.985b ± 0.010.946 ± 0.130.981b ± 0.01
UOA_WB_10.907 ± 0.200.896 ± 0.120.918 ± 0.140.883 ± 0.120.895 ± 0.14
BBU4Arranged0.949 ± 0.120.950 ± 0.130.947 ± 0.130.949 ± 0.130.906 ± 0.19
Non Arranged0.946 ± 0.120.952 ± 0.130.944 ± 0.140.948 ± 0.130.944 ± 0.14
UOA_WB_10.958 ± 0.030.915 ± 0.030.937 ± 0.030.775 ± 0.360.881 ± 0.03
BBU5Arranged0.943 ± 0.150.935 ± 0.170.939 ± 0.190.931 ± 0.190.934 ± 0.18
Non Arranged0.904 ± 0.160.925 ± 0.170.935 ± 0.170.922 ± 0.180.924 ± 0.20
  • Values in bold presented significant differences (P < 0.05) by F-test. Different small letters presented differences (P < 0.05) in the mean between the buffalo assembly (UOA_WB_1), arranged and non-arranged chromosome and marker scenario by Tukey multiple comparisons of means test.