Table 2 Mean and standard deviation the proportion of alleles correctly imputed in the centromeric regions (± 1 Mb of the centromere) for five B. bubalis submetacentric chromosomes, considering the UOA_WB_1 buffalo genome assembly, and the bovine genome assembly (UMD) a priori (Non Arranged) and a posteriori (Arranged) chromosome arrangement to the imputation in different marker scenarios
CHRAssemblySNP Set
10%15%20%25%30%
UOA_WB_10.975a ± 0.030.969a ± 0.020.950a ± 0.060.929a ± 0.040.908a ± 0.06
BBU1Arranged0.973a ± 0.030.979a ± 0.020.979b ± 0.020.981b ± 0.020.977b ± 0.03
Non Arranged0.893b ± 0.110.940b ± 0.060.943a ± 0.070.958c ± 0.050.942b ± 0.07
UOA_WB_10.981 ± 0.020.945a ± 0.020.947a ± 0.040.957a ± 0.030.927a ± 0.03
BBU2Arranged0.981 ± 0.020.984b ± 0.020.983b ± 0.020.988b ± 0.010.982b ± 0.02
Non Arranged0.974 ± 0.020.982b ± 0.020.980b ± 0.020.988b ± 0.010.978b ± 0.01
UOA_WB_10.988a ± 0.010.979 ± 0.010.937a ± 0.050.936a ± 0.060.944a ± 0.02
BBU3Arranged0.989a ± 0.010.982 ± 0.020.988b ± 0.010.979b ± 0.030.987b ± 0.01
Non Arranged0.976b ± 0.010.982 ± 0.010.988b ± 0.010.975b ± 0.030.985b ± 0.01
UOA_WB_10.954 ± 0.070.933a ± 0.030.953 ± 0.040.924a ± 0.040.931 ± 0.04
BBU4Arranged0.970 ± 0.050.974b ± 0.030.973 ± 0.040.975b ± 0.040.963 ± 0.06
Non Arranged0.967 ± 0.050.976b ± 0.030.970 ± 0.040.973b ± 0.040.974 ± 0.04
UOA_WB_10.969 ± 0.020.956 ± 0.010.950 ± 0.020.897 ± 0.010.909 ± 0.04
BBU5Arranged0.975 ± 0.050.972 ± 0.050.976 ± 0.060.972 ± 0.060.976 ± 0.05
Non Arranged0.950 ± 0.040.967 ± 0.050.972 ± 0.050.967 ± 0.050.970 ± 0.05
  • Values in bold presented significant differences (P < 0.05) by F-test. Different small letters presented differences (P < 0.05) in the mean between the buffalo assembly (UOA_WB_1), arranged and non-arranged chromosome and marker scenario by Tukey multiple comparisons of means test.