Table 1 Summary of chronic wasting disease genomic predictions in farmed U.S. white-tailed deer (Odocoileus virginianus)
k-Fold SubsampleGBLUP Model CovariatesMean AUC (SD)aMean Matthews Coefficient (SD)Mean Genomic Prediction Accuracy (SD)Mean Sensitivity (SD)Mean Specificity (SD)Mean RMSE (SD)b
k = 3None0.8471 (0.0068)0.5871 (0.0152)0.8167 (0.0066)0.6447 (0.0117)0.9101 (0.0091)0.3768 (0.0043)
k = 3Sex, Age, U.S. Region0.8534 (0.0063)0.5787 (0.0158)0.8119 (0.0070)0.6735 (0.0122)0.8870 (0.0081)0.3746 (0.0040)
k = 5None0.8485 (0.0053)0.5940 (0.0132)0.8198 (0.0057)0.6496 (0.0110)0.9121 (0.0060)0.3754 (0.0028)
k = 5Sex, Age, U.S. Region0.8542 (0.0047)0.5870 (0.0123)0.8159 (0.0055)0.6716 (0.0110)0.8942 (0.0066)0.3734 (0.0025)
  • a Area Under the Curve (AUC; Wilcoxon Mann Whitney Method; See Methods).

  • b Root Mean Square Error (RMSE; See Methods).