Table 2 Summary of transposable elements in the Metrosideros polymorpha pseudo-molecules identified with manual annotation and RepeatMasker
Manual annotationRepeatMasker
Nr. familiesNr. elementsTE space, bpTE space, %Nr. elementsTE space, bpTE space, %
Class I (retrotransposons)
 LTR4530516158961235.601409563701912.25
  Gypsy191556369784392.46376914397150.51
  Copia24873362583632.21779942284671.49
  Pao185213340.01
 SINE196175910.01
 LINE29017010300.25
  L120205831180.21
  RTE327663100.02
  R1/LOA/Jockey153196980.01
  L2/CR1/Rex175142760.01
Class II (DNA transposons) Subclass 1
 TIR164081366432072.3456868207490.29
  Mutator42260835648131.26
  CACTA13483693940.13
  hAT213963705600.1313121993200.07
  PIF-Harbinger8231788580.06
  TcMar1137463<0.01
Class II (DNA transposons) Subclass 2
  Helitron323442387370.089712370190.08
Unclassified10910297<0.01
Total TEs227780678.03147630052.88