Table 1 SNP and genes significantly associated with phenotypic sex in Nile tilapia (Oreochromis niloticus)
SNPLG1Position (bp)Binary sexPVAR3Gene
(p-val2)
NC_031986.2:34501082LG23345010823.03e-130.691Amh4
NC_031986.2:34502865LG23345028651.28e-120.656-
NC_031986.2:34502864LG23345028644.32e-120.625-
NC_031986.2:34510529LG23345105298.98e-120.619-
NC_031986.2:34503003LG23345030032.15e-110.596-
NC_031986.2:34502748LG23345027482.43e-110.578Amh
NC_031986.2:34502756LG23345027563.79e-110.573Amh
NC_031986.2:34491574LG23344915746.54e-110.578-
NC_031986.2:34503006LG23345030061.08e-100.550-
NC_031986.2:34512000LG23345120001.38e-100.557-
NC_031986.2:34492336LG23344923361.46e-100.540-
NC_031986.2:34500954LG23345009542.65e-100.524Amh
NC_031986.2:34492141LG23344921413.29e-100.512-
NC_031986.2:34689299LG23346892993.43e-100.537-
NC_031986.2:34510584LG23345105843.88e-100.517-
NC_031986.2:34509215LG23345092154.03e-100.531-
NC_031986.2:34500823LG23345008234.61e-100.507Amh
NC_031986.2:34501194LG23345011945.84e-100.500Amh
NC_031986.2:34501574LG23345015747.71e-100.489Amh
NC_031986.2:34502034LG23345020348.58e-100.498Amh
NC_031986.2:34491477LG23344914771.18e-090.485-
NC_031986.2:34787936LG23347879361.21e-090.496-
NC_031986.2:34502582LG23345025821.53e-090.477Amh
NC_031986.2:34500543LG23345005431.58e-090.486Amh
NC_031986.2:34433907LG23344339073.42e-090.469Pias45
NC_031986.2:34510652LG23345106523.64e-090.453
NC_031986.2:34504122LG23345041224.28e-090.467
NC_031986.2:34505919LG23345059196.91e-090.452
NC_031986.2:34504349LG23345043491.00e-080.444
NC_031986.2:34503967LG23345039671.08e-080.443
NC_031986.2:34510699LG23345106991.10e-080.428
NC_031986.2:34969977LG23349699771.48e-080.421
NC_031986.2:34642986LG23346429861.50e-080.419
NC_031986.2:34596057LG23345960571.60e-080.438
NC_031986.2:34590018LG23345900181.83e-080.419ELL6
NC_031986.2:34502993LG23345029932.07e-080.413
  • 1 Linkage group.

  • 2 P-value.

  • 3 Proportion of the genetic variance explained by SNP.

  • 4 Anti-Müllerian hormone.

  • 5 Protein inhibitor of activated STAT 4.

  • 6 Elongation factor for RNA polymerase II.