Table 4 Top associated genes for average daily gain (ADG), back fat thickness (BFT), meat to fat ratio (MFR), and carcass length (CRCL) identified in the GWAS. Genes incorporating or nearby the top 5 variants in the clusters are listed with chromosome and cluster numbers
TraitSSCCluster no./SSCGenes
ADG21SHANK2
41RPS20, LYN, PLAG1
72HMGCLL1, TFEB
BFT11ZNF462, ENSSSCG00000005432
27LOC102158414, PGA5, MRPL16, ENSSSCG00000013151, ZFP91, CTNND1, ENSSSCG00000024984, OR9Q2, OR10Q1
41RPS20
724SCGN, LRFN2, DAAM2, C7H6orf223, C7H6orf132, RIPOR2, CARMIL1, BMP5, ENSSSCG00000001500, KIFC1, C6orf106, PPARD, FKBP5, CPNE5, ENSSSCG00000001574, TMEM217, LRFN2, MRPS10, TRERF1, RUNX2, RCAN2, MEP1A, ADGRF5, PTCHD4, ENSSSCG00000001734, PGK2, IREB2, ABHD17C, GSTA2, CRABP1, CRISP3, PRSS16, TBC1D2B, ENSSSCG00000038708, BCL2A1, E2F3
MFR13LOC106507123, TMEM245, SCAI, ABL1, RAPGEF1, CFAP77, DDX31, MAPKAP1
28LOC102158414, LOC110259166, LOC110259708, TMEM80, DEAF1, EHD1, MACROD1, ATL3, NAV2, DHCR7, ENSSSCG00000028537, CTTN, SHANK2, ENSSSCG00000036180 (KRTAP5-5-like), NELL1
43PDE7A, SNTG1, RPS20
51ENSSSCG00000034097
71ENSSSCG00000001500
186PPP1R3A, IMMP2L, LRRC4, EXOC4, SND1, ELMO1, MDFIC, TFEC
CRCL11FNBP1
752VEGFA, FLRT2, LRFN2, MCTP2, DAAM2, PGF, SV2B, MAX, COL21A1, KLHL25, NPAS3, LOC110261756, NHLRC1, TPMT, CDKAL1, GMNN, RIPOR2, MDC1, DDX39B, HMGCLL1, ENSSSCG00000001500, C6orf106, KCTD20, SRSF3, ENSSSCG00000001612, FOXP4, TFEB, RCAN2, ADGRF1, MUT, CRISP1, TFAP2D, PKHD1, BNC1, ENSSSCG00000001827, TMEM266, NKX2-1, PRKD1, LPCAT4, NR2F2, MCTP2, SLCO3A1, ENSSSCG00000002270, FUT8, ENSSSCG00000002317, DPF3, PTGR2, ZNF410, FAM161B, EIF2B2, MLH3, VIPAS39, SPTLC2, ENSSSCG00000010328, RF01299, RF00100, HMGN4, NRXN3, ID4, SYNJ2BP, ZFP36L1, RAD51B, AVEN, ANG, GCM1, FOXG1, ENSSSCG00000033840, ENSSSCG00000035274, RSL24D1, NSSSCG00000036697,ENSSSCG00000037115, ENSSSCG00000038445, CEMIP, SLC25A21, SPTSSA, ENSSSCG00000039877, DIO2, ENSSSCG00000040930
178BMP2, JAG1, SPTLC3, TMX4