Table 3 Identification of local imputation inaccuracies. Chip data from each of the 24 founders was imputed using the remaining 23 founder animals as the reference panel. Coefficients of determination (R^{2}) were calculated for each variant in order to calculate average R^{2} for SSC1, SSC2, SSC4, SSC7, SSC17, and SSC18 Chromosome | Average R^{2} | SD |
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1 | 0.28 | 0.32 |

2 | 0.22 | 0.29 |

4 | 0.25 | 0.30 |

7 | 0.25 | 0.31 |

17 | 0.18 | 0.25 |

18 | 0.29 | 0.32 |