Table 1 Statistical summary of the ‘Catigan Green Dwarf’ (CATD) coconut assembly using various sequencing technologies and corresponding bioinformatics pipelines
PARAMETERSSPARSE (ILLUMINA MISEQ)SPARSE + DBG2OLC (ILLUMINA MISEQ + PACBIO SMRT)HIRISE PIPELINE + PBJELLY (DRAFT ASSEMBLY + DOVETAIL CHICAGO)
Assembly Summary
 Genome Coverage73.9%88.3%97.6%
 Sequence Count482,72425,0207,998
 Total Length1.59 Gbp1.9 Gbp2.102 Gbp
 N505,247 bp119 kbp570,487 bp
 Longest Sequence57,454 bp1,725,761 bp8,779,653 bp
 Shortest Sequence801 bp906 bp1,912 bp
 Average Length3,295.14 bp76,510 bp570,487 bp
 GC Level37.64%
 N Content0.285%
 Number of Gaps12,106
 Complete BUSCOs1322 (91.8%)
 Alignment Rate (‘CATD’ Illumina Miseq WGS)96.96%
 Alignment Rate (Quality-trimmed RNAseq reads -  SRR1173229)95.7%
Annotation Summary
 Number of gene models34,958
 Average gene length7724.72 bp
 Average exon length267.36 bp
 Average intron length1448.73 bp
 Average number of exons per gene5.34
 Average number of introns per gene4.34
 Average protein length373.18
 Complete BUSCOs85.3