Table 4 Genome assembly statistics
Number of scaffoldsAll74,159
>1-Kbp12,067 (16.3%)
>10-Kbp6,202 (8.4%)
>100-Kbp1,117 (1.5%)
Scaffold length (bp)N50a87,338
Summedb418,422,425
Longest731,388
Mean5,642
Median185
Fraction of N bases in assembly (%)2.22
GC content of assembly (%)32.4
  • a Half of the bases in the assembly are in scaffolds at least this long.

  • b The summed, end-to-end length of all scaffolds.