Table 1 Packages, their purpose and repositories
NamePurposeGitHub Repository1
BEDMatrixMatrix-like class to extract genotypes from PLINK .bed files
LinkedMatrixMatrix-like class to link matrix-like objects by rows or by columns
symDMatrixMatrix-like class to link blocks of matrix-like objects into a partitioned symmetric matrix
BGDataComputational methods for matrix-like objects, a class to represent genotype/phenotype data, and the flagship package of the suite