Table 1 Genome and transcriptome libraries used in this study*
TypeStrainSRA AccessionSample nameLibrary type***Raw read pairs
GenomeAPS4ERS3048742 (SAMEA5241338)APS4_250bp_1PE30115881
ERS3048743 (SAMEA5241339)APS4_250bp_2PE44755823
ERS3048744 (SAMEA5241340)APS4_250bp_3PE48130281
APS4ERS3048745 (SAMEA5241341)APS4_3kbMP141654936
ERS3048746 (SAMEA5241342)APS4_6kbMP108976027
APS6ERS3048747 (SAMEA5241343)APS6_450bpPE24219024
Genome (RAD- seq)F2Ls between APS4 and APS6ERS3048748 (SAMEA5241344)2014132_MBlib1 (24 samples)RAD44063445
ERS3048749 (SAMEA5241345)2014132_MBlib2 (24 samples)RAD47384155
ERS3048750 (SAMEA5241346)2014132_MBlib3 (24 samples)RAD48905114
ERS3048751 (SAMEA5241347)2014132_MBlib4 (25 samples)RAD39742808
TranscriptomeAPS4See**L2_fem_lib1RNA17110716
L2_fem_lib2RNA16629611
L2_fem_lib3RNA17379062
L2_DA_fem_lib1RNA18536076
L2_DA_fem_lib2RNA17170105
L2_DA_fem_lib3RNA16962402
L2_herm_lib1RNA15562977
L2_herm_lib2RNA16078424
L2_herm_lib3RNA16426418
Males_lib1RNA16341785
Males_lib2RNA16760682
Males_lib3RNA13624819
Mixed_stages_lib1RNA24190447
Mixed_stages_lib2RNA22250315
Mixed_stages_lib3RNA33719128
  • * All genomic data have been submitted under Bioproject number PRJEB29492.

  • ** RNA-seq data have been deposited in the ArrayExpress database at EMBL-EBI (www.ebi.ac.uk/arrayexpress) under accession number E-MTAB-7667.

  • *** PE: paired-end genomic; MP: mate-pair genomic; RAD: paired-end RAD-seq; RNA: paired-end RNA-seq.