Table 2 General linear models for the top scoring SNPs for circadian period and phase measured in July for the Arabidopsis thaliana Ws-2 × C24 (A), Ws-2 × Ler (B) and Ler × Ws-2 (C) RIL sets. Chromosome and nucleotide position for each SNP are provided. R2 for each SNP as estimated from ANOVA models and phenotypic means and standard errors for genotypic classes are shown
Genotypic Mean ± SE.
TraitChr.NucleotideF-valueP-valueR2Ws-2/Ws-2C24/C24
A. Ws-2 × C24Period214,500,57712.710.00060.1423.40 ± 0.1123.90 ± 0.08
35,551,1874.560.0360.0624.37 ± 0.3023.70 ± 0.07
39,377,8644.000.04920.0523.42 ± 0.1723.80 ± 0.08
5669,8136.580.01240.0824.06 ± 0.1423.65 ± 0.08
Phase127,046,2669.270.00130.1314.43 ± 0.1615.13 ± 0.14
35,551,1874.910.02960.0615.83 ± 0.4814.74 ± 0.11
39,377,8647.450.00790.0914.17 ± 0.2614.95 ± 0.12
318,651,92812.970.00060.1514.39 ± 0.1515.14 ± 0.14
Genotypic Mean ± SE.
TraitChr.NucleotideF-valueP-valueR2Ws-2/Ws-2Ler/Ler
B. Ws-2 × LerPeriod3849,70618.710.00010.2023.68 ± 0.1322.92 ± 0.11
38,816,9044.980.02860.0622.67 ± 0.2723.31 ± 0.10
51,335,24226.060.00010.2624.13 ± 0.1923.03 ± 0.09
Phase15,689,1693.150.080.0411.67 ± 0.3810.95 ± 0.14
217,179,7988.470.00470.1010.12 ± 0.3411.18 ± 0.14
3849,7065.230.02500.0710.78 ± 0.1711.38 ± 0.20
Genotypic Mean ± SE.
TraitChr.NucleotideF-valueP-valueR2Ler/LerWs-2/Ws-2
C. Ler × Ws-2Period3849,70614.100.00040.1823.31 ± 0.4220.45 ± 0.64
59,524,9478.220.00560.1122.96 ± 0.4020.34 ± 0.82
524,941,28517.480.00010.2221.66 ± 0.3924.99 ± 0.70
Phase118,082,87211.550.00120.1519.08 ± 0.2214.88 ± 1.22
524,941,2856.910.01070.1018.57 ± 0.2519.94 ± 0.45