Table 3 Busco scores demonstrating genome quality before or after polishing
NameSingle copyDuplicateFragmentedMissingComplete
FlyBase r6.162,749 (98.2%)14 (0.5%)22 (0.8%)14 (0.5%)2,763
MiniMap14 (0.5%)0 (0.0%)31 (1.1%)2,754 (98.4%)14
DBG2OLC1,332 (47.6%)3 (0.1%)557 (19.9%)907 (32.4%)1,335
Canu1,884 (67.3%)11 (0.2%)557 (19.9%)347 (12.4%)1,895
QuickMerge (QM) 2x1,623 (58.0%)6 (0.3%)560 (20.0%)610 (21.8%)1,629
QM 2x Nanopolish (NP)2,189 (78.2%)8 (0.3%)400 (14.3%)202 (7.2%)2,197
QM 2x NP + Pilon x22,726 (97.4%)14 (0.5%)39 (1.6%)20 (0.7%)2,740
QM 2x Pilon x22,718 (97.1%)14 (0.5%)45 (1.4%)22 (0.8%)2,732
QM 2x Bionano2,715 (97.0%)15 (0.5%)40 (1.4%)29 (1.0%)2,730
QM 2x Bionano All2,720 (97.2%)16 (0.6%)40 (1.4%)23 (0.8%)2,736