Table 4 Candidate genes underlying marker trait association (MTA) peaks resulting from co-expression analysis
ModuleCandidate geneMTA chrMTA positionPvalue (-log10)AnnotationArabidopsis ortholog
1GLYMA.09G001300910619610.77FAR1 DNA-binding domainAT4G15090
1GLYMA.06G3253006513166399.29Methylenetetrahydrofolate reductaseAT2G44160
1GLYMA.12G24230012400774244.21Dynamin familyAT1G59610
1GLYMA.12G24250012400774244.21Methyltransferase domainAT1G22800
1GLYMA.11G1065001181063723.92Plasma-membrane choline transporter family proteinAT4G38640
1GLYMA.03G022900324289823.44SEC7-like guanine nucleotide exchange family proteinAT3G60860
2GLYMA.10G219500104511088540.77RNA-binding proteinAT1G71800
2GLYMA.16G000500163432015.04Ribonucleoprotein-relatedAT4G24270
2GLYMA.13G27850013379651325.66Nucleolar GTP-binding family proteinAT1G52980
2GLYMA.11G24500011338856963.43Regulator of chromosome condensation (RCC1)AT3G26100