Table 2 The top five most significant hits from a genome-wide association study of ACC in (A) Both sexes, (B) Females only and (C) Males only. No SNPs reached the genome-wide significance of P = Embedded Image The SNP locus names indicate the position of the SNPs relative to the cattle genome assembly vBTA_vUMD_3.1 (indicated by Chromosome_Position). Linkage groups and map positions (in centiMorgans, cM) are from Johnston et al. (2017). A and B are the reference alleles. Effect B is the estimated effect and standard error of the B allele as estimated in RepeatABEL (Rönnegård et al. 2016). P-values have been corrected for the genomic inflation parameter λ. Full results are available in Table S3
SexSNP LocusDeer Linkage GroupMap Position (cM)ABEffect B(SE)Embedded ImagePMAF
A. Bothcela1_red_10_260052491236.4GA1.530.2822.731.87e-060.33
cela1_red_8_1006813011643.5AG6.421.1921.872.91e-060.02
cela1_red_10_256617501235.6AG2.180.4220.65.67e-060.1
cela1_red_1_354230493146.2AG1.40.2917.313.18e-050.25
cela1_red_10_213724381234.5AG1.220.2616.25.69e-050.42
B. Femalescela1_red_10_256617501235.6AG2.810.5621.074.44e-060.1
cela1_red_10_260052491236.4GA1.580.3516.844.07e-050.33
cela1_red_8_1006813011643.5AG6.251.416.724.34e-050.02
cela1_red_1_354230493146.2AG1.620.3716.375.22e-050.25
cela1_red_11_913786781186.5AG13.613.2215.031.06e-040.02
C. Malescela1_red_10_497329241252.6GA−2.90.6618.251.94e-050.14
cela1_red_1_1285939041913.5GA−1.990.4617.323.15e-050.18
cela1_red_15_694141718.9AG−1.930.4616.744.28e-050.21
cela1_red_2_101879999835.2GA1.510.3914.281.58e-040.44
cela1_red_15_741750019.2AC−1.930.513.91.93e-040.17