| Total number of samples genotyped | 372 | 384 |
| Sequencing platform | Paired-end | Single-end |
| Illumina HiSeq 2000 | Ion Proton |
| Average (Median) Reads/Sample after QC | 12,221,976 (12,097,256) | 1,793,300 (1,365,265) |
| Average (Median) Sequence/Sample after QC | 965,295,176 (955,561,340) | 195,057,311 (146,026,776) |
| Average (Median) missing rate / SNP | 41.39% (41.67%) | 58.65% (63.02%) |
| Average (Median) Proportion Het Calls / SNP before imputation | 2.05% (0.42%) | 4.12% (3.82%) |
| Average (Median) Proportion Het Calls / SNP after imputation | 1.63% (0.53%) | 4.72% (2.86%) |
| Average (Median) MAF / SNP before imputation | 1.89% (1.18%) | 11.69% (5.43%) |
| Average (Median) MAF / SNP after imputation | 1.24% (0.67%) | 10.37% (3.26%) |
| Total SNPs | 649,067 | 73,291 |
| SNPs with MAF >0.05 after imputation | 15,306 | 32,463 |