Table 3 The most significant hits from a regional heritability analysis of ACC in (A) Both sexes, (B) Females only and (C) Males only. Sliding windows were 20 SNPs wide with an overlap of 10 SNPs. Lines in italics are the most highly associated regions from detailed examination of significant regions - in each case these are for 10 SNP windows. The 
and P values are for likelihood ratio test comparisons between models with and without a genomic relatedness matrix for that window; values in bold type are significant the the genome-wide level. The SNP locus names indicate the position of the SNPs relative to the cattle genome assembly vBTA_vUMD_3.1 (indicated by Chromosome_Position). Full results are available in Tables S4 & S5
and P values are for likelihood ratio test comparisons between models with and without a genomic relatedness matrix for that window; values in bold type are significant the the genome-wide level. The SNP locus names indicate the position of the SNPs relative to the cattle genome assembly vBTA_vUMD_3.1 (indicated by Chromosome_Position). Full results are available in Tables S4 & S5| Sex | Deer Linkage Group |  | P | First SNP | Last SNP | Region  | SE |
|---|---|---|---|---|---|---|---|
| A. Both | 12 | 32.30 | 1.32e-08 | cela1_red_10_20476277 | cela1_red_10_20939342 | 0.143 | 0.053 |
| 12 | 28.62 | 8.81e-08 | cela1_red_10_19617695 | cela1_red_10_20977030 | 0.080 | 0.043 | |
| 12 | 25.11 | 5.41e-07 | cela1_red_10_20519507 | cela1_red_10_21807996 | 0.080 | 0.045 | |
| 12 | 22.91 | 1.70e-06 | cela1_red_10_18871213 | cela1_red_10_20476277 | 0.105 | 0.055 | |
| 32 | 16.55 | 4.73e-05 | cela1_red_27_38731584 | cela1_red_27_40264086 | 0.056 | 0.034 | |
| 32 | 15.76 | 7.21e-05 | cela1_red_27_39821973 | cela1_red_27_41274975 | 0.071 | 0.045 | |
| B. Females | 12 | 28.14 | 1.13e-07 | cela1_red_10_20476277 | cela1_red_10_20939342 | 0.146 | 0.045 |
| 12 | 24.34 | 8.06e-07 | cela1_red_10_19617695 | cela1_red_10_20977030 | 0.089 | 0.048 | |
| 12 | 23.5 | 1.25e-06 | cela1_red_10_20519507 | cela1_red_10_21807996 | 0.102 | 0.056 | |
| 12 | 20.03 | 7.61e-06 | cela1_red_10_18871213 | cela1_red_10_20476277 | 0.133 | 0.068 | |
| 12 | 13.72 | 2.12e-04 | cela1_red_10_21000545 | cela1_red_10_22450693 | 0.089 | 0.054 | |
| 12 | 12.32 | 4.49e-04 | cela1_red_10_21878407 | cela1_red_10_26041475 | 0.177 | 0.087 | |
| C. Males | 5 | 14.07 | 1.76e-04 | cela1_red_19_15289588 | cela1_red_19_16108226 | 0.133 | 0.052 |
| 5 | 12.61 | 3.84e-04 | cela1_red_19_15753501 | cela1_red_19_16923111 | 0.137 | 0.058 | |
| 20 | 8.77 | 3.06e-03 | cela1_red_3_110763634 | cela1_red_3_112123206 | 0.142 | 0.085 | |
| 32 | 8.51 | 3.52e-03 | cela1_red_27_38731584 | cela1_red_27_40264086 | 0.119 | 0.076 | |
| 1 | 8.21 | 4.17e-03 | cela1_red_15_6354196 | cela1_red_15_7482634 | 0.123 | 0.056 |