Table 3 CEGMA Core gene results for the genome assemblies of all six Juglans species and the outgroup P. stenoptera. CEGMA: Complete and Partial record the number and fraction of all 248 ultra-conserved CEGs present in the assembly as a complete or partial annotation respectively. Partial annotations use a more liberal cutoff that includes all complete annotations. BUSCO: The number and percentage of 1440 single copy Embryophyte genes present in the assembly. These results are further broken down into single-copy and duplicated genes. *Summary results for v1.0 and v1.5 assemblies were the same for both analyses
J. cathayensisJ. nigraJ. regia*J. hindsiiJ. sigillataJ. microcarpaP. stenoptera
CEGMA
Complete207201206203201201205
>%83.4781.0583.0681.8581.0581.0582.66
Partial235232235239238238234
%94.7693.5594.7696.3795.9795.9794.35
BUSCO
Complete1330134613701357134313201323
%92%93%95%94%93%92%92%
Single-copy10051198107111871185780743
%70%83%74%82%82%54%52%
Duplicated325148299170158540580
%23%10%21%12%11%38%40%
Fragmented32261428283741
%2%2%1%2%2%3%3%
Missing78685655698376
%5%5%4%4%5%6%5%