Table 2 Origin of the genome data
SpeciesCollection and strainBioProjectSize, MbGene numberGC%Sequencing methodCoverageAssemblyIsolated from
Rhizopus arrhizus
NRRL 13440PRJNA18601343.35111,87135.2Illumina HiSeq86.09×MaSuRCA v.1.9.2tracheal biopsy
NRRL 18148PRJNA18601447.53512,59935.0-//-22.51×-//-sinus
NRRL 21396PRJNA18601742.78311,71535.2-//-64.45×-//-sinus
UCLA 99-113PRJNA18601641.45311,99535.4-//-18.30×-//-bone marrow
UCLA 99-892PRJNA18602037.46411,67535.2-//-85.45×Velvet v.1.2.07lung transplant
(Mucor ramosissimusa)UCLA 97-1182PRJNA18602442.90012,95135.3-//-73.11×MaSuRCA v.1.9.2bronchial wash
CDC B7407PRJNA18487943.27211,66434.9-//-47.77×-//-nasal cavity
UCLA HUMC 02PRJNA18601839.01111,78534.6-//-103.09×Velvet v.1.2.07sinus
R. delemar
NRRL 21446PRJNA18602236.99911,40235.5-//-75.13×-//-face biopsy
NRRL 21447PRJNA18602137.25411,38735.5-//-80.49×-//-brain, ear
NRRL 21477PRJNA18601938.88211,52334.8-//-80.75×-//-face biopsy
NRRL 21789 (R. oryzaeb)PRJNA18601542.01811,41435.4-//-41.53×MaSuRCA v.1.9.2sinus
UCLA 99-880 (R. oryzaeb)PRJNA1306645.26312,384 (17,467)35.6Sanger ABI14.00×Arachne v.1.0brain abscess
R. microsporus
(R. azygosporusc)CBS-KNAW 357.93PRJNA41806415.9204,43036.8Illumina HiSequnknownCelera v.8.2tempeh
ATCC 52813PRJNA20595725.3488,847 (10,905)37.5-//-143.6×AllPathsLG v. R41043soil
CDC B9738PRJNA21190375.13321,09133.3-//-37.36×MaSuRCA v.1.9.2abdomen
CCTCC M201021PRJNA17933945.70015,773 (20,087)36.9-//-100.00×SOAPdenovo v.1.12liquor leaven
CDC B7455PRJNA21191348.73016,72937.2-//-37.36×-//-abdomen
(M.racemosusd)UMSoM B9645PRJNA21190265.53317,67132.5-//-49.38×-//-floor
R. stolonifer
LSU 92-RS-03PRJNA41806429.73311,62137-//-unknownCelera v.8.2.sweet potato
CDC B9770PRJNA18488638.02611,77835.5-//-42.23×MaSuRCA v.1.9.2contaminated product
M. circinelloides (outgroup)
DUSoM 1006PhLPRJNA17243734.13512,69339.5-//-45.00×ALLPATHS v.R43527unknown
CDC B8987PRJNA18488036.70113,40739.5-//-100.43×-//-BL line
  • Incorrectly identified strains are shown in parentheses: a - R. arrhizus, b - R. delemar, c and d - R. microsporus.

  • -//- = same as above.

  • Culture collections: ATCC – American Type Culture Collection; CBS-KNAW - The Centraalbureau voor Schimmelcultures, Westerdijk Fungal Biodiversiry Centre at institute of the Royal Netherlands Academy of Arts and Sciences; CCTCC - China Center for Type Culture Collection; CDC - Center for Disease Control and Prevention; DUSoM – Duke University, School of Medicine, LSU – Louisiana State University; NRRL - Northern Regional Research Lab, ARS Culture Collection of USDA; UCLA – University of California, Los Angeles; UMSoM - University of Maryland, School of Medicine.