Table 2 Variants detected by whole genome resequencing of an affected German Hunting Terrier. Private variants were exclusively present in the affected dog and had homozygous reference or missing genotype calls in 191 control genomes
Filtering stepVariantsa
Homozygous variants in whole genome3,129,879
Private homozygous variants in the whole genome2,555
Private protein changing homozygous variants in the whole genome23
Private protein changing homozygous variants in the ACADVL gene1
  • a Only variants which passed the GATK quality filter were counted.