Table 1 List of enriched GO terms and Pfam domains in fungal gene sets that were up-regulated in planta compared to Mated, arranged in order of decreasing magnitude of normalized enrichment score (NES)
Common Enrichment in Genes Upregulated in Both Male and Female over >1 Stage When Compared to Mated, FDR q Value < 0.05
SMALL SECRETED PROTEINa
UNIQUE TO MVIO
SECRETED PROTEIN
PF00295.10|GLYCO_HYDRO_28[GLYCOSYL HYDROLASES FAMILY 28]
GO:0006412[TRANSLATION > BP]
GO:0006281[DNA REPAIR > BP]
PF00125.17|HISTONE[CORE HISTONE H2A/H2B/H3/H4]
GO:0003735[STRUCTURAL CONSTITUENT OF RIBOSOME > MF]
GO:0005840[RIBOSOME > CC]
PF00012.13|HSP70[HSP70 PROTEIN]
PF06723.6|MREB_MBL[MREB/MBL PROTEIN]
GO:0000786[NUCLEOSOME > CC]
PF01095.12|PECTINESTERASE[PECTINESTERASE]
Enrichment in genes up-regulated in different stagesb compared to Mated, FDR q value <0.05
 GO:0006334[NUCLEOSME ASSEMBLY > BP] (infected male plants Stages 8–10, combined infected male and female Stage 10)
 PF07731.7|CU-OXIDASE_2[MULTICOPPER OXIDASE] (infected male plants Stages 8, combined infected male and female Stage 8)
 PF07732.8|CU-OXIDASE_3[MULTICOPPER OXIDASE] (combined infected male and female Stages 8 and 9)
 PF00394.15|CU-OXIDASE[MULTICOPPER OXIDASE] (combined infected male and female Stages 8 and 10)
 PF03169.8|OPT[OPT OLIGOPEPTIDE TRANSPORTER PROTEIN ](infected female plant Stage 7)
 PF07250.4|GLYOXAL_OXID_N[GLYOXAL OXIDASE N-TERMINUS]] (combined infected male and female Stage 8, infected female Stages 9 and 10)
 PF09118.4|DUF1929[DOMAIN OF UNKNOWN FUNCTION (DUF1929) ] (combined infected male and female Stage 9)
 GO:0005634[NUCLEUS > CC] (infected male plant Stage 10, combined infected male and female Stage 10 and late stage 9)
 GO:0003677[DNA BINDING > MF] (infected male plant Stage 10, combined infected male and female Stage 10)
 GO:0006950[RESPONSE TO STRESS > BP] (infected male plant Stages 9 and 10)
 PF09118.4|DUF1929[DOMAIN OF UNKNOWN FUNCTION (DUF1929)] (infected female plant Stage 10)
 GO:0006414[TRANSLATIONAL ELONGATION > BP] (combined infected male and female Stage 10)
 PF11754.1|VELVET[VELVET FACTOR] (combined infected male and female Stage 10)
 PF00082.15|PEPTIDASE_S8[SUBTILASE FAMILY] (infected female plant late stage)
 PF06280.5|DUF1034[FN3-LIKE DOMAIN (DUF1034)](infected female plant late stage)
 PF01490.11|AA_TRANS[TRANSMEMBRANE AMINO ACID TRANSPORTER PROTEIN] (infected female plant late stage)
 None (infected male floral stem, infected female floral stem, combined infected male and female floral stem)
 None with GO terms or PFAM domains (infected male plant late stage)
  • a Complete listings of Conditions, Gene Set Enrichments, number of members in set, magnitude of NES, and FDR q-val are found in Table S5.

  • b Stages where enriched indicated in parentheses in bold.