Table 4 List of enriched GO terms and Pfam domains in fungal gene sets that were down-regulated in late stage of floral development compared to earlier plant stages
Common Enrichment in >1 Stage Across >1 Set of Comparisons, q Value < 0.05
SMALL SECRETED PROTEINa
SECRETED PROTEIN
PF00295.10|GLYCO_HYDRO_28[GLYCOSYL HYDROLASES FAMILY 28]
PF03169.8|OPT[OPT OLIGOPEPTIDE TRANSPORTER PROTEIN]
PF00011.14|HSP20[HSP20/ALPHA CRYSTALLIN FAMILY]
Enrichment compared with corresponding Late stageb
 KO04141[PROTEIN PROCESSING IN ENDOPLASMIC RETICULUM] (infected male Stage 8, combined infected male and female Stage 8)
 PF01095.12|PECTINESTERASE[PECTINESTERASE] (infected male Stage 8, combined infected male and female Stages 8 and 9)
 GO:0003677[DNA BINDING > MF] (infected male Stage 10, combined infected male and female Stage 10)
 GO:0005737[CYTOPLASM > CC] (infected male Stage 10, combined infected male and female Stages 9 and 10)
 PF07724.7|AAA_2[AAA DOMAIN (CDC48 SUBFAMILY)] (infected male Stage 10, combined infected male and female Stages 9 and 10)
 PF10431.2|CLPB_D2-SMALL[C-TERMINAL, D2-SMALL DOMAIN, OF CLPB PROTEIN] (infected male Stage 10, combined infected male and female Stages 9 and 10)
 PF00004.22|AAA[ATPASE FAMILY ASSOCIATED WITH VARIOUS CELLULAR ACTIVITIES (AAA)] (infected male Stage 10, combined infected male and female Stages 9 and 10)
 PF00158.19|SIGMA54_ACTIVAT[SIGMA-54 INTERACTION DOMAIN] (infected male Stage 10, combined infected male and female Stages 9 and 10)
 GO:0006334[NUCLEOSME ASSEMBLY > BP] (combined infected male and female Stage 10)
 GO:0000786[NUCLEOSOME > CC] (combined infected male and female Stage 10)
 PF00125.17|HISTONE[CORE HISTONE H2A/H2B/H3/H4] (combined infected male and female Stage 10)
  • a Complete listings of Conditions, Gene Set Enrichments, number of members in set, magnitude of NES, and FDR q-value are found in Table S5.

  • b Stages where enriched indicated in parentheses in bold.