Table 2 ALLMAPS genome scaffolding statistics
FeatureScaffolded 0-1 Assembly
Markers652
Markers per Mb15.3
Scaffolded contigs43
Scaffolded bases42,704,288
Unscaffolded contigsa42
Unscaffolded basesb3,804,678
Scaffold N50c4,379,536
Scaffold L50d5
Genome % scaffolded91.8%
Total scaffolds12
  • a Contigs lacking a marker from either linkage map used when scaffolding.

  • b Total bases in the unscaffolded contigs.

  • c Smallest number of scaffolds whose length equals 50% of genome assembly.

  • d Length of the smallest scaffold in an ordered set of scaffolds corresponding to 50% of the assembly length.