Table 2 All orthologous relationships between Brook Trout, Arctic Char, Atlantic Salmon, and Rainbow Trout as determined by MapComp using the Atlantic Salmon genome as a reference
Brook Trout Linkage Group (This Study)Brook Trout Linkage Group (Sutherland et al. 2016)Arctic Char Linkage Group (Nugent et al. 2017)Atlantic Salmon ChromosomeRainbow Trout Chromosome
4BC01AC18pSsa19qbOmy16p
4BC01AC18Ssa01qaOmy23
29BC02AC03pSsa07pOmy21p
29BC02AC24Ssa07q5Omy21q
40BC02* and BC37AC03p and AC24Ssa17qb5Omy15q
10BC03AC01qSsa12qa2Omy17p
10BC03AC01pSsa12qbOmy17q
21BC04AC13pSsa23Omy04p
38BC04AC13qSsa04p4Omy10q
16BC05AC27pSsa16qb7
16BC05AC27qSsa29Omy15p
2BC06AC15pSsa24Omy06p
2BC06AC10Ssa266Omy06q
18BC07AC06qSsa05pOmy14p
18BC07AC06pSsa05q1Omy14q
1BC08AC21Ssa13qbOmy12q
1BC08AC20bSsa03q3Omy12p
7BC09AC23Ssa04qOmy10p
26BC10AC05Ssa11qbOmy sex
24BC11AC19Ssa03pOmy28
5BC12AC01 and AC40Ssa01pOmy19q
22BC13AC29Ssa01qbOmy05p
1BC14AC20aSsa06p3Omy13q
17BC15AC04qSsa10qbOmy02q
17 and 27BC15 and BC17AC16 and AC04qSsa10qaOmy05q
BC16Ssa19qa
23BC18AC17qaSsa13qaOmy16q
15BC19AC28Ssa15qaOmy08p
20BC20AC26Ssa16qaOmy01p
12BC21AC11Ssa22Omy07q
8BC22AC32Ssa14qaOmy08q
9BC23AC31Ssa27Omy18q
32BC24AC02Ssa25Omy03q
14BC25AC22Ssa20qbOmy27
6BC26Ssa21Omy22
BC27AC08pSsa28
30 and 39BC28AC10Ssa11qa6Omy26
25BC29AC35Ssa02p1Omy03p
13BC30AC07Ssa15qbOmy09q
19 and 31BC31AC14qSsa06qOmy04q
17BC32AC37Ssa18qb
35 and 36BC33AC08qSsa09qbOmy20p
28BC34AC30Ssa14qbOmy14p
3BC35AC04qSsa09qaOmy25
33BC36AC25Ssa18qaOmy01q
11BC38AC04pSsa09qcOmy24
16*BC39AC12Ssa17qa7Omy07p
15BC40AC33Ssa20qaOmy11q
36BC41AC13q and AC34Ssa08q4Omy19p
BC42AC01qSsa02q2
  • Atlantic Salmon chromosome arms annotated with numbers 1–8 in superscript represent arms with evidence for residual tetrasomy as identified in Lien et al. (2011, 2016). Brook Trout linkage groups in bold represent metacentric chromosomes.