Table 3 Unexpected haplotype blocks in all CSS panels
PanelStrainChr.StartEndLengthShould BeActually Is# Ensembl Genes
A.B6C57BL/6J-Chr1A/J/NaJ13,211,05122,830,80419,619,754AB6117
A.B6C57BL/6J-Chr1A/J/NaJ1192,442,075195,365,6912,923,617AB625
A.B6C57BL/6J-Chr4A/J/NaJ4154,799,715156,166,7471,367,033A or B6Het63
A.B6C57BL/6J-Chr5A/J/NaJ5149,410,906150,567,0491,156,144A or B6Het16
A.B6C57BL/6J-Chr8A/J/NaJ1136,650,63342,751,2896,100,657B6A28
A.B6C57BL/6J-Chr10A/J/NaJ10127,645,772129,615,2581,969,487A or B6Het102
A.B6C57BL/6J-Chr16A/J/NaJ1693,670,02598,040,4544,370,430AB647
A.B6C57BL/6J-Chr17A/J/NaJ173,071,4286,154,7733,083,346AB625
PWD.B6C57BL/6J-Chr1PWD/ForeJ3123,275,916143,575,20420,299,289B6Het138
PWD.B6C57BL/6J-Chr3PWD/ForeJ324,121,11124,179,21258,102PWDB61
PWD.B6C57BL/6J-Chr4PWD/ForeJ5148,956,085151,725,2882,769,204B6Het33
PWD.B6C57BL/6J-Chr9PWD/ForeJ9123,944,659124,087,880143,222PWDB63
PWD.B6C57BL/6J-Chr10.1PWD/ForeJ1057,607,01860,613,2853,006,268PWD or B6Het37
PWD.B6C57BL/6J-Chr10.2PWD/ForeJ1045,150,57851,959,1386,808,561PWD or B6Het21
PWD.B6C57BL/6J-Chr10.2PWD/ForeJ1095,379,265101,638,0846,258,820PWD or B6Het32
PWD.B6C57BL/6J-Chr10.3PWD/ForeJ1073,546,54874,465,198918,651PWD or B6Het1
PWD.B6C57BL/6J-Chr11.1PWD/ForeJ113,105,9313,877,120771,190PWD or B6Het29
PWD.B6C57BL/6J-Chr11.1PWD/ForeJ1179,051,42379,574,667523,245PWD or B6Het10
PWD.B6C57BL/6J-Chr11.2PWD/ForeJ1135,418,36843,961,7338,543,366PWD or B6Het53
PWD.B6C57BL/6J-Chr11.3PWD/ForeJ11120,588,649121,967,8491,379,201PWDB660
PWD.B6C57BL/6J-Chr12PWD/ForeJ12116,831,193120,014,7653,183,573PWDB616
PWD.B6C57BL/6J-Chr19PWD/ForeJ1960,070,47061,261,3001,190,831PWDB620
PWD.B6C57BL/6J-ChrX.3PWD/ForeJX167,416,568169,593,0202,176,453PWDB616
MSM.B6C57BL/6J-Chr4-MSM424,485,86824,671,707185,840MSMB63
MSM.B6C57BL/6J-Chr6C-MSM63,180,3173,410,126229,810MSMB62
MSM.B6C57BL/6J-Chr6T-MSM6147,160,651149,556,8292,396,179MSMB639
MSM.B6C57BL/6J-Chr11-MSM11121,160,079121,967,849807,771MSMB621
MSM.B6C57BL/6J-Chr12C-MSM1195,151,543195,285,766134,224B6Het2
MSM.B6C57BL/6J-Chr13T-MSM1823,532,04626,528,6432,996,598B6Het24
MSM.B6C57BL/6J-Chr14-MSM14122,545,401124,751,0192,205,619MSMB610
MSM.B6C57BL/6J-Chr15-MSM15102,415,461103,628,0261,212,566MSMB646
MSM.B6C57BL/6J-Chr16-MSM1695,378,12298,069,6532,691,532MSMB628
MSM.B6C57BL/6J-Chr19-MSM1957,068,41560,681,5683,613,154MSMB627