| Category | Gene-model count |
|---|---|
| A – Single gene-model features used for classification | |
| Multi-exonic | 47,874 |
| Full-length | 28,403 |
| Expression | 17,411 |
| InterPro | 36,243 |
| Protein evidence | 41,609 |
| Mono-exonic | 6956 |
| Full-length | 6874 |
| Expression | 1649 |
| Interpro | 6956 |
| Protein evidence | 6944 |
| B – Gene-model classification based on combined features | |
| Multi-exonic | |
| Total high quality (expression/Interpro/ protein evidence) | 34,239 |
| Full-length | 20,616 |
| Partial | 13,623 |
| Mono-exonic | |
| Total high quality (expression/Interpro/ protein evidence) | |
| Full-length | 1641 |
| Total high quality full-length (Multi- and mono-exonic) | 22,257 |
| Total high quality (Multi- and mono-exonic) | 35,880 |
| Total low quality (Multi- and mono-exonic) | 18,950 |
InterPro. gene model containing at least a recognizable protein domain; expression, gene model supported by RNA-Seq data corresponding to de novo assembled Douglas-fir transcripts; protein evidence, gene model with protein sequence similar to existing plant proteins in public databases (used as input for MAKER-P).