Table 2 Top five SNP associations for kindling, GST1, GST6, and retest GST
PhenotypePosition (bp)a−logPSNP IDM.A.F.bFlanking Genes Within 500 kb of SNPc
Kindling1:1744207535.86E−09rs37079100.1433Igfs8, Atp1a2, Kcnj9, Kcnj10, Pigm, Igsf9, Slamf9, Tafln2, Cfap45, Slamf8, Fcrl6, Dusp23, Crp
1:1751511125.86E−09rs82424810.182Olfr1408, Olfr1406, Olfr218, Mptx2, Olfr1404, Olfr418, Ackr1, Cadm3, Aim2, Gm4995
1: 1747975136.06E−09rs304636650.25Dusp23, Crp, Apcs, SNORA17, Olfr16
1: 1765333101.40E−08rs20204860.22Olfr417, Olfr248, Olfr414, olfr220, Fmn2
1: 1742399581.41E−08rs304722290.25Copa, Pex19, Dcaf8, Pea15a, Casaq1, Igfs8, Atp1a2, Kcnj9, Kcnj10, Pigm
GST day 11: 1744207533.15E−06rs37079100.143Igfs8, Atp1a2, Kcnj9, Kcnj10, Pigm, Igsf9, Slamf9, Tagln2, Cfap45, Slamf8, Fcrl6, Dusp23
1: 1751511123.15E−06rs82424810.182Olfr16, Olfr1408, Olfr1406, Olfr218, Mptx2, Olfr1404, Olfr418, Ackr1, Cadm3, Aim2
1: 1744554234.22E−06rs315611770.4Igfs8, Atp1a2, Kcnj9, Kcnj10, Pigm, Igsf9, Slamf9, Tafln2, Cfap45, Slamf8, Fcrl6, Dusp23, Crp
7: 874099914.61E−06rs42267150.2###Rik, Zfp710, idh2, Cib1, Ttll13, Ngrn, Rccd1, Prc1, Unc45a, Vps33b, Man2a2, Fes, Furin, Blm
1: 1742399584.98E−06rs304722290.25Ncstn, Copa, Pex19, Dcaf8, Pea15a, Casaq1, Igfs8, Atp1a2, Kcnj9, Kcnj10, Pigm, Igsf9, Slamf9
GST day 64: 1386468682.29E−07rs329146320.2Otud3, Pla2g2a, Pla2g2e, Rnf186, Tmco4, Htr6, Nbl1, Minos, Capzb, Pqlc2
4: 1381297295.93E−07rs320070810.25Cda, Fam43b, Mul1, ABO41806, Camk2n1, Vwa5b1, Ubxn10, Pla2g2c, Pla2g25
4: 1370422876.80E−07rs275770550.25Wnt4, Cdc42, Cela3a, Cela 3b, Hspg2, Ldlrad2, ####Rik, Usp48, Rap1gap
4: 1373537619.71E−07rs82565720.33Ldlrad2, ####Rik, Usp48, Rap1gap, Rap1gapcs, Alpl, Ece1, Eif4g3
4: 1382910471.13E−06rs275751020.4ABO41806, Camk2n1, Vwa5b1, Ubxn10, Pla2g2c, pla2g25, Otud3, Pla2g2a
GST retest4: 1507290746.53E−07rs321631080.4Camta1
4: 1508861387.71E−07rs327578320.25Camta1
4: 1506597791.11E−06rs134780530.5Vamp3, Camta1
4: 1506810541.97E−06rs325908390.667Uts2, Per3, Vamp3, Camta1
4: 1507453172.26E−06rs321808160.5Camta1
  • a Position relative to NCBI Build 37 genome assembly.

  • b Minor allele frequency.

  • c Genes in bold are considered the best candidates for influence over trait.