Table 1 Details on genomic resequencing and read mapping
Reference ( of chromosomes20
Number of scaffolds1,170
Total reference length (bp)978,495,272
Mapped reads (PI 603408)Total read count585,030,981
Mean mapped read length (bp)99.9
Mapped total read length (bp)58,431,063,227
Mean coverage59.1-fold
Mean coverage excluding zero coverage regions62.9-fold
Mean paired end distance (bps)180.5
Unaligned reads (PI 603408)Total read count94,436,522
Unaligned percentage of all reads16.1
Zero coverage regions (PI 603408)Mean length (bp)277.34
Total length (bps)58,284,351
Percentage of genome (%)6.0