Table 3 Summary of transposable elements in PA42 3.0
ClassSubclassCladeNo. of Full-Length (Fragmented) ElementsFraction of Genome (%)
DNA transposonsTIRHarbinger13 (518)0.23
Hat1 (3)0.01
p element3 (10)0.02
Mariner19 (168)0.15
isl2eu50 (172)0.22
HelitronHelitron26 (215)0.21
 Subtotal112 (1086)0.83
RetrotransposonsLTR retrotransposonsBel61 (1134)1.06
Copia133 (2408)2.12
Gypsy141 (2059)2.16
Dirs20 (522)0.47
Non-LTR retrotransposonsJockey18 (246)0.21
L13 (46)0.04
L227 (323)0.31
Loa15 (137)0.14
 Subtotal418 (6875)6.53
Total530 (7961)7.36
  • TIR, terminal inverted repeat; LTR, long terminal repeat.