Table 2 QTL identified for 14 traits using the high-density SNP bin map under a short-day photoperiod
Trait QTLChrom.BinQTL Peak Position (cM)LOD ScoreAdditiveR2 (%)
HDqhd66bin1333116.514.62−1.374.46
PLqpl11bin154138.44.130.983.8
qpl22bin423240.124.85−1.14.5
qpl4-24bin87083.43.330.883.05
qpl5-25bin1210213.113.490.893.2
qpl99bin177112.435.07−1.154.98
TNqtn22bin388205.983.420.222.88
qtn4-24bin845764.57−0.283.85
qtn55bin1187193.912.770.4411.31
PWqpw22bin467293.953.65−0.683.36
qpw44bin87286.463.460.663.14
PDqpd11bin157140.944.490.124.08
qpd55bin1190195.453.690.113.35
qpd9-29bin177112.433.27−0.113.56
FLLqfll2-12bin4242413.49−1.383.08
qfll2-22bin468294.994.81−1.584.32
qfll4-24bin87489.54.571.524.05
qfll99bin177112.436.46−1.916.14
FLWqflw22bin421239.193.23−0.043.09
qflw5-15bin103683.53.31−0.043.28
PHqph44bin87590.964.392.343.68
qph55bin1186191.9311.11−3.9810.8
qph66bin1343120.023.79−2.163.17
CNqcn2-22bin423240.126.23−4.065.6
qcn44bin82658.93.352.832.96
CGNqcgn66bin126949.095.71−9.566.43
TGWqtgw77bin1549174.295.62−0.145.35
NLqnl55bin1187193.9314.76−2.2114.24
qnl66bin1335117.293.31−0.962.68
  • QTL, quantitative trait loci; Chrom., chromosome; LOD, logarithm of the odds difference; R2, phenotypic variation; HD, heading data; PL, panicle length; TN, tiller number; PW, panicle weight; PD, panicle diameter; FLL, flag-leaf length; FLW, flag-leaf width; PH, plant height; CN, code number; CGN, code grain number; TGW, thousand-grain weight; NL, neck length.