Table 1 Basic parameters of both GBS experiments described in this work
Spring 2014Fall 2014
EnzymesPstI-MspIKpnI-MspI
Number of F2 individuals268813
Multiplexing3296
Reads per sample (mean ± SD)a618,843.7 ± 178,135.8134,447.3 ± 50,788.87
No. of sites (<5% missing data)2144301
No. of sites (<50% missing data)5812837
No. of sites (<75% missing data)70581096
  • a Numbers are based on good, barcoded, aligned reads.