| Combination | 488 (Green) | Red (Cy3) | Blue (Cy5) |
|---|---|---|---|
| C1 | (AATAT)6 | (AATAG)6 | 359 |
| C2 | (AATAGAC)6 | (AATAC)6 | (AATAAAC)6 |
| C3 | IGS | (AAGAG)6 | Prod: (AATAACATAG)3 |
| C4 | IGS | 372 | 359 |
| C5 | (AAGAG)6 | Dodeca | (AACAC)6 |
| C6 | (AATAT)6 | (GAACAGAACATGTTC)2 | (AACAAAC)5 |
| C7 | (AATAT)6 | (AAGAC)6 | (AAAAC)6 |
| C8 | (AAGAG)6 | (AAGAC)6 | (AAGAGAG)5 |
| C9 | (AATAT)6 | (GAACAGAACATGTTC)2 | 359 |
| C10 | (AATAT)6 | (GAACAGAACATGTTC)2 | Dodeca |
| C11 | (AATAT)6 | (TAGA)8 | 260 |
See Materials and Methods for the sequence details of the probes for 359, 372, 260, IGS, and dodeca.