Table 5 Summary of total and validated bioinformatic SNP calls among the sequenced accessions that included both diploids and tetraploids using allele-specific discrimination assays
GenotypeDiploidsTetraploidsTotal
Homozygous122360482Total SNP callsb
Heterozygousa300300
Total122660782
Homozygous108319427Validated SNP callsb
Heterozygous209209
Total108528636
% matched calls88.5280.0081.32
  • a Heterozygous SNP calls for tetraploids are likely the result of the homeologous SNPs derived from two sub-genomes and do not indicate that genotypes are in heterozygous state.

  • b Total SNP calls and validated SNP calls are presented in File S3.