Table 2 De novo assembly characteristics of sequences from twenty-two transcriptomes
GenotypeReadsTotal TranscriptsaUnique TranscriptsbN50
GKP1001716,015,71337,76727,7451333
GK1060224,501,05744,63527,4061484
K798818,698,56339,08827,2191393
KSSc3890116,206,92937,37925,5301401
GKPSSc3007616,774,12531,80026,1021107
GKSSc3009718,264,04834,67326,8081238
K948420,009,99141,75028,2871405
KSSc3602413,852,23537,65427,2611159
GKBSPSc3006216,366,54637,94426,6541184
BSS5623,249,77839,34326,7351294
Florunner (UF439-16-10-3-2)18,498,90039,34927,2261253
Jupiter43,494,03474,61531,1841687
New Mexico Valencia C43,327,34571,26430,6771655
OLin38,335,24667,09830,6731641
PI502111(COC155B)22,844,45541,51326,9321370
PI290538 (COC224)19,126,67439,91627,1741200
PI268868 (COC367)25,275,01838,98325,0791401
PI158854 (COC559)31,318,10147,00727,0381419
PI64824127,952,73443,76327,3271355
PI64824223,770,11844,20627,1461405
Tamrun OL0741,601,12779,21444,7601535
TxAG-619,865,76646,39928,0891359
  • a Number of total transcripts including splice variants, homeolog and paralog copies assembled using the de novo assembly approach for each of the accession.

  • b Number of unique transcripts that were in each genotype excluding the derivatives such as splice variants/homeologs.