Table 6 Summary of the assembly and SNP calls using de novo and phased approach on OLin transcriptome
NameNo. of ContigsN50Contigs with SNPsContigs with >1 SNPsContigs with >2 SNPsHeterozygous Callsa
OLin_de novo67,098164130,91825,88822,071241,497
OLin_Phased87,214129229,67720,44014,593109,937
  • a Heterozygous calls could be the result of homeolog collapse in the reference or alignment errors.