Table 4 Variants in each accession were identified in comparison to OLin as the reference
GenotypeNo. of Transcripts with SNPsNo. of Homozygous VariantsaAverage No. of SNPs per TranscriptbNumber of SNPs per kbc
DiploidsGKP1001722,192117,8125.311.57
GK1060222,564106,8824.741.43
K798821,931122,3705.581.64
KSSc3890121,693117,2525.411.57
GKPSSc3007618,47596,2415.211.28
GKSSc3009721,638109,7975.071.47
K948424,929168,2896.752.25
KSSc3602424,064157,4446.542.11
TetraploidsGKBSPSc30062696314,3402.060.19
BSS56532690121.690.12
Florunner (UF439-16-10-3-2)555794541.70.12
Jupiter184433181.80.04
New Mexico Valencia C214634511.610.04
PI502111(COC155B)536194681.770.12
PI290538 (COC224)606810,8321.790.14
PI268868 (COC367)471584911.80.11
PI158854 (COC559)430672091.670.09
PI648241466982121.760.11
PI648242408470811.730.09
Tamrun OL07226339231.730.05
TxAG-622,60787,5743.871.17
  • Note: OLin is not reported here as the above comparisons were made relative to OLin transcriptome.

  • a Number of homozygous SNPs present in each accession relative to OLin transcriptome.

  • b Average number of transcripts calculated using Number of homozygous SNPs/Number of transcripts in an accession.

  • c SNP rate calculated based on pair-wise comparison of each accession with OLin.