Table 1 The characteristics of C. rubrum transcriptome assemblies produced by various assemblers
ContigsChimerasDETONATEContiguity 80%Completeness 80%
AssemblerTotal NumberAverage LengthNonredundantN50Transcripts%ScoreBeta vulgarisArabidopsisBeta vulgarisArabidopsis
Trinity v2013-02-25176,1761165176,176224043642.48−133002543570.8390.8970.8040.855
Trinity v2014-04-13109,2301224109,230213016611.52−119427082450.8880.8490.9140.873
Trinity v2.06103,364839103,27213886060.59−134892160000.8570.8150,9150.875
Trans-Abyss (MK)478,002687477,947104120280.42−104785400270.9170.8820.9370.897
Velvet-Oases (MK)1,025,8411022681,326178811,3371.66/a0.8690.8230.9380.904
SOAPdenovo-Trans (MK)698,830163692,9193001450.02−205606464520.3060.2510.9260.825
Newbler22,587122722,5801354140.06−167002907180.6570.6150.6870.643
EvidentialGene40,48791240,4871383240.06−156611250940.8850.8460.8940.856
  • a Not calculated.